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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.307097 (36 seq.)
>W1710803002
LJYG01000004
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
29534
29609
+
Ala
CGC
[ENA]
¡û
>W1710877755
LMQJ01000056
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
143569
143644
+
Ala
CGC
[ENA]
¡û
>W1711138876
LVEM01000002
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
176717
176792
+
Ala
CGC
[ENA]
¡û
>W131191584
ASJA01000017
Alphaproteobacteria
Euryhalocaulis caribicus JL2009 [ASJA]
75693
75618
-
Ala
CGC
[ENA]
¡û
>W1711256864
LYSZ01000001
Alphaproteobacteria
Parvularcula sp. BBD 1991-13 [LYSZ]
18267
18342
+
Ala
CGC
[ENA]
¡û
>W1711502258
MKSM01000105
Alphaproteobacteria
Nitrobacter sp. 62-23 [MKSM]
1241
1316
+
Ala
CGC
[ENA]
¡û
>W1711928810
NAFI01000172
Alphaproteobacteria
Bradyrhizobium canariense [NAFI]
124961
124886
-
Ala
CGC
[ENA]
¡û
>W1711961826
NCST01000039
Alphaproteobacteria
Henriciella aquimarina [NCST]
12872
12947
+
Ala
CGC
[ENA]
¡û
>W131170255
ARFJ01000027
Alphaproteobacteria
Bradyrhizobium japonicum USDA 124 [ARFJ]
41371
41296
-
Ala
CGC
[ENA]
¡û
>C018926
CP000301
Alphaproteobacteria
Rhodopseudomonas palustris [CP000301]
65372
65297
-
Ala
CGC
[Ensembl]
¡û
>WENV180282550
OBIC01000137
[OBIC] beach sand metagenome; beach sand
339
414
+
Ala
CGC
[ENA]
¢þ
>WENV180292295
OBIV01385861
[OBIV] soil metagenome; Clay
99
24
-
Ala
CGC
[ENA]
¢þ
>WENV180293600
OBIY01000166
[OBIY] beach sand metagenome; beach sand
339
414
+
Ala
CGC
[ENA]
¢þ
>WENV180309330
OBJS01000052
[OBJS] beach sand metagenome; beach sand
70536
70461
-
Ala
CGC
[ENA]
¢þ
>W141043061
AMFB01000028
Alphaproteobacteria
Bradyrhizobium sp. DFCI-1 [AMFB]
100866
100791
-
Ala
CGC
[ENA]
¡û
>W141063662
APJD01000019
Alphaproteobacteria
Bradyrhizobium sp. OHSU_III [APJD]
115285
115210
-
Ala
CGC
[ENA]
¡û
>W141063711
APJE01000014
Alphaproteobacteria
Afipia sp. OHSU_I-C6 [APJE]
9093
9168
+
Ala
CGC
[ENA]
¡û
>W141151106
AXAU01000008
Alphaproteobacteria
Bradyrhizobium murdochi WSM1741 [AXAU]
150579
150504
-
Ala
CGC
[ENA]
¡û
>W141151209
AXAW01000039
Alphaproteobacteria
Bradyrhizobium elkanii USDA 3259 [AXAW]
34875
34950
+
Ala
CGC
[ENA]
¡û
>C181113205
CP025113
Alphaproteobacteria
Bradyrhizobium sp. SK17 [CP025113]
1436002
1435927
-
Ala
CGC
-
¡û
>C191071700
CP030051
Alphaproteobacteria
Bradyrhizobium guangdongense CCBAU 51649 [CP030051]
319327
319252
-
Ala
CGC
-
¡û
>W09103858
AALA01000003
Alphaproteobacteria
Rhodopseudomonas palustris BisA53 [AALA]
224703
224628
-
Ala
CGC
[ENA]
¡û
>W1910840257
MZXW01000016
Alphaproteobacteria
Bradyrhizobium betae Opo-243 [MZXW]
161909
161984
+
Ala
CGC
[ENA]
¡û
>W1911749134
QWFX01000005
Alphaproteobacteria
Henriciella mobilis JN25 [QWFX]
720291
720216
-
Ala
CGC
[ENA]
¡û
>W1911749216
QWFY01000040
Alphaproteobacteria
Henriciella mobilis M69 [QWFY]
217423
217348
-
Ala
CGC
[ENA]
¡û
>W1911749240
QWFZ01000020
Alphaproteobacteria
Henriciella mobilis M65 [QWFZ]
95918
95993
+
Ala
CGC
[ENA]
¡û
>W1810493426
QBDX01000004
Alphaproteobacteria
Hyphobacterium indicum 2ED5 [QBDX]
1181587
1181662
+
Ala
CGC
[ENA]
¡û
>C121003018
CP002826
Alphaproteobacteria
Afipia carboxidovorans OM5 [CP002826]
229630
229555
-
Ala
CGC
-
¡û
>C161017392
CP007569
Alphaproteobacteria
Bradyrhizobium japonicum SEMIA 5079 [CP007569]
8121909
8121834
-
Ala
CGC
[Ensembl]
¡û
>W121065583
AJQD01000385
Alphaproteobacteria
Bradyrhizobium liaoningense CCBAU 83689 [AJQD]
19611
19536
-
Ala
CGC
[ENA]
¡û
>W1610666859
LJYG01000004
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
29534
29609
+
Ala
CGC
[ENA]
¡û
>W1610740101
LMQJ01000056
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
143569
143644
+
Ala
CGC
[ENA]
¡û
>W1610949884
LVEM01000002
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
176717
176792
+
Ala
CGC
[ENA]
¡û
>W1611019889
LYSZ01000001
Alphaproteobacteria
Parvularcula sp. BBD 1991-13 [LYSZ]
18267
18342
+
Ala
CGC
[ENA]
¡û
>W1710564278
FOQJ01000008
Alphaproteobacteria
Bradyrhizobium sp. cf659 [FOQJ]
125689
125614
-
Ala
CGC
[ENA]
¡û
>W1710578499
FPBQ01000001
Alphaproteobacteria
Bradyrhizobium arachidis [FPBQ]
26446
26521
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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