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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.307132 (15 seq.)
>W131219728
ATYU01000013
Actinomycetota
Acidipropionibacterium acidipropionici DSM 4900 [ATYU]
64462
64535
+
Arg
ACG
[ENA]
¡û
>W131230046
AUHH01000009
Actinomycetota
Granulicoccus phenolivorans DSM 17626 [AUHH]
51636
51711
+
Arg
ACG
[ENA]
¡û
>C171044703
CP015970
Actinomycetota
Acidipropionibacterium acidipropionici F3E8 [CP015970]
2086066
2085993
-
Arg
ACG
-
¡û
>C171092739
CP019400
Actinomycetota
Acidipropionibacterium acidipropionici WSH1105 [CP019400]
1728401
1728328
-
Arg
ACG
-
¡û
>WENV180342824
OBLJ01148599
[OBLJ] soil metagenome; Clay
3
78
+
Arg
ACG
[ENA]
¢þ
>WENV180690613
OCZS010014431
[OCZS] soil metagenome; soil
2321
2396
+
Arg
ACG
[ENA]
¢þ
>C191030064
CP025198
Actinomycetota
Acidipropionibacterium virtanenii JS278 [CP025198]
481305
481378
+
Arg
ACG
-
¡û
>C191073460
CP031057
Actinomycetota
Acidipropionibacterium acidipropionici WGS7 [CP031057]
790235
790308
+
Arg
ACG
-
¡û
>C191180438
CP040634
Actinomycetota
Acidipropionibacterium acidipropionici FAM 19036 [CP040634]
199913
199986
+
Arg
ACG
-
¡û
>C161051561
CP013126
Actinomycetota
Acidipropionibacterium acidipropionici CGMCC 1.2230 [CP013126]
1561023
1561096
+
Arg
ACG
-
¡û
>C161071881
CP014352
Actinomycetota
Acidipropionibacterium acidipropionici ATCC 55737 [CP014352]
1787427
1787354
-
Arg
ACG
[Ensembl]
¡û
>W1610067994
BCQZ01000002
Actinomycetota
Granulicoccus phenolivorans NBRC 107789 [BCQZ]
82574
82649
+
Arg
ACG
[ENA]
¡û
>C131003868
CP003493
Actinomycetota
Acidipropionibacterium acidipropionici ATCC 4875 [CP003493]
3244520
3244447
-
Arg
ACG
[Ensembl]
¡û
>W1710065367
BCQZ01000002
Actinomycetota
Granulicoccus phenolivorans NBRC 107789 [BCQZ]
82574
82649
+
Arg
ACG
[ENA]
¡û
>W1710510780
FMYF01000003
Actinomycetota
Raineyella antarctica [FMYF]
155518
155445
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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