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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.307138 (110 seq.)
>W1710795425
LJRA01000138
Gammaproteobacteria
Pseudomonas coronafaciens pv. porri [LJRA]
424
349
-
Thr
TGT
[ENA]
¡û
>W1710835012
LLJL01000298
Gammaproteobacteria
Pseudomonas savastanoi pv. fraxini [LLJL]
36704
36779
+
Thr
TGT
[ENA]
¡û
>W1710868248
LMIY01000001
Gammaproteobacteria
Pseudomonas sp. Root9 [LMIY]
214576
214501
-
Thr
TGT
[ENA]
¡û
>W1710878486
LMQZ01000007
Gammaproteobacteria
Pseudomonas sp. Leaf434 [LMQZ]
169040
168965
-
Thr
TGT
[ENA]
¡û
>W1710901389
LNKY01000174
Gammaproteobacteria
Pseudomonas syringae group genomosp. 3 pv. tomato [LNKY]
13249
13174
-
Thr
TGT
[ENA]
¡û
>W1711078229
LSMR01000122
Gammaproteobacteria
Neptuniibacter sp. Phe_28 [LSMR]
3406
3331
-
Thr
TGT
[ENA]
¡û
>W131221142
AUAF01000019
Gammaproteobacteria
Zooshikella ganghwensis DSM 15267 [AUAF]
9547
9622
+
Thr
TGT
[ENA]
¡û
>W131221180
AUAF01000266
Gammaproteobacteria
Zooshikella ganghwensis DSM 15267 [AUAF]
702
627
-
Thr
TGT
[ENA]
¡û
>W1711718353
MTHK01000033
Gammaproteobacteria
Pseudomonas syringae pv. actinidiae [MTHK]
38265
38340
+
Thr
TGT
[ENA]
¡û
>W1711718449
MTHM01000008
Gammaproteobacteria
Pseudomonas syringae pv. actinidiae [MTHM]
38270
38345
+
Thr
TGT
[ENA]
¡û
>W1711718792
MTHS01000045
Gammaproteobacteria
Pseudomonas syringae pv. actinidiae [MTHS]
38136
38211
+
Thr
TGT
[ENA]
¡û
>W1711726765
MTSB01000015
Gammaproteobacteria
Pseudomonas graminis [MTSB]
86261
86186
-
Thr
TGT
[ENA]
¡û
>W1711735361
MTZE01000064
Gammaproteobacteria
Pseudomonas syringae pv. actinidiae [MTZE]
1888
1963
+
Thr
TGT
[ENA]
¡û
>W1711744528
MUIN01000001
Gammaproteobacteria
Pseudomonas sp. Bc-h [MUIN]
2451
2376
-
Thr
TGT
[ENA]
¡û
>W1711783555
MVOJ01000006
Gammaproteobacteria
Pseudomonas sp. MF6394 [MVOJ]
200796
200871
+
Thr
TGT
[ENA]
¡û
>C171099119
CP019732
Gammaproteobacteria
Pseudomonas syringae pv. actinidiae CRAFRU 14.08 [CP019732]
321677
321602
-
Thr
TGT
-
¡û
>W131061808
ANJF01000002
Gammaproteobacteria
Pseudomonas syringae ICMP 18806 [ANJF]
93345
93270
-
Thr
TGT
[ENA]
¡û
>W131061887
ANJG01000074
Gammaproteobacteria
Pseudomonas syringae pv. actinidiae TP1 [ANJG]
1908
1983
+
Thr
TGT
[ENA]
¡û
>W131092886
AOKA01000322
Gammaproteobacteria
Pseudomonas syringae pv. actinidiae ICMP 19102 [AOKA]
3640
3565
-
Thr
TGT
[ENA]
¡û
>W131093344
AOKJ01000308
Gammaproteobacteria
Pseudomonas syringae pv. actinidiae ICMP 19094 [AOKJ]
9036
9111
+
Thr
TGT
[ENA]
¡û
>WENV180042591
LQAF01010102
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
314
389
+
Thr
TGT
[ENA]
¢þ
>WENV180280429
OBHY01011131
[OBHY] human gut metagenome; Tissue from the tricuspid valve
188
263
+
Thr
TGT
[ENA]
¢þ
>WENV180280542
OBHZ01009582
[OBHZ] human gut metagenome; Vulva exsudate
183
258
+
Thr
TGT
[ENA]
¢þ
>W141079521
ATLP01000112
Gammaproteobacteria
Pseudomonas sp. CF161 [ATLP]
326237
326162
-
Thr
TGT
[ENA]
¡û
>WENV180914431
ODSW01005145
[ODSW] human metagenome; G_DNA_Posterior fornix
237
309
+
Thr
TGT
[ENA]
¢þ
>W141092194
AUZR02000178
Gammaproteobacteria
Pseudomonas syringae pv. pisi str. PP1 [AUZR]
40275
40350
+
Thr
TGT
[ENA]
¡û
>WENV181190869
OEPS010005693
[OEPS] soil metagenome; soil
197
122
-
Thr
TGT
[ENA]
¢þ
>WENV181371109
OFQU01026767
[OFQU] wastewater metagenome; Exp Tend CN 90WW
737
662
-
Thr
TGT
[ENA]
¢þ
>W141283873
JALK01000005
Gammaproteobacteria
Pseudomonas syringae DSM 10604 [JALK]
68405
68330
-
Thr
TGT
[ENA]
¡û
>WENV183057565
OLHL01010287
[OLHL] seawater metagenome; Sea water
672
747
+
Thr
TGT
[ENA]
¢þ
>WENV170263210
CERC01026653
[CERC] marine metagenome genome assembly TARA_070_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5675
5750
+
Thr
TGT
[ENA]
¢þ
>C191052234
CP027711
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ChPhzTR44 [CP027711]
387908
387833
-
Thr
TGT
-
¡û
>C191053553
CP027731
Gammaproteobacteria
Pseudomonas sp. R2-60-08W [CP027731]
372647
372572
-
Thr
TGT
-
¡û
>C191054276
CP027742
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca 464 [CP027742]
396138
396063
-
Thr
TGT
-
¡û
>C191054731
CP027749
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens ChPhzTR39 [CP027749]
379497
379422
-
Thr
TGT
-
¡û
>C191055261
CP027757
Gammaproteobacteria
Pseudomonas synxantha R2-4-08W [CP027757]
379956
379881
-
Thr
TGT
-
¡û
>C191126788
CP034537
Gammaproteobacteria
Pseudomonas poae CAP-2018 [CP034537]
1114050
1114125
+
Thr
TGT
-
¡û
>W141808660
JPQT01000112
Gammaproteobacteria
Pseudomonas syringae [JPQT]
34505
34580
+
Thr
TGT
[ENA]
¡û
>W1910504148
FYDH01000001
Gammaproteobacteria
Pseudomonas sp. Irchel s3h9 [FYDH]
189509
189434
-
Thr
TGT
[ENA]
¡û
>W1910504521
FYDN01000005
Gammaproteobacteria
Pseudomonas sp. Irchel s3a12 [FYDN]
153919
153844
-
Thr
TGT
[ENA]
¡û
>W1910620765
LKCB01000141
Gammaproteobacteria
Pseudomonas syringae pv. cerasicola ICMP 13929 [LKCB]
2051
1976
-
Thr
TGT
[ENA]
¡û
>W1910757035
MLEE01000020
Gammaproteobacteria
Pseudomonas amygdali pv. morsprunorum R19646 [MLEE]
84256
84331
+
Thr
TGT
[ENA]
¡û
>W1910758170
MLFM01000012
Gammaproteobacteria
Pseudomonas syringae 260-02 [MLFM]
113931
113856
-
Thr
TGT
[ENA]
¡û
>W1910766117
MOAL01000003
Gammaproteobacteria
Pseudomonas chlororaphis 14D6 [MOAL]
253107
253032
-
Thr
TGT
[ENA]
¡û
>W1910767590
MOBK01000010
Gammaproteobacteria
Pseudomonas brassicacearum 38D7 [MOBK]
38632
38557
-
Thr
TGT
[ENA]
¡û
>W1910811376
MVAV01000056
Gammaproteobacteria
Pseudomonas syringae BS2121 [MVAV]
63646
63721
+
Thr
TGT
[ENA]
¡û
>W1910811635
MVBA01000073
Gammaproteobacteria
Pseudomonas syringae ZUM3584 [MVBA]
69816
69891
+
Thr
TGT
[ENA]
¡û
>W1910873983
NDXW01000001
Gammaproteobacteria
Zooshikella ganghwensis VG4 [NDXW]
5168176
5168101
-
Thr
TGT
[ENA]
¡û
>W1910874008
NDXW01000001
Gammaproteobacteria
Zooshikella ganghwensis VG4 [NDXW]
134186
134111
-
Thr
TGT
[ENA]
¡û
>W1910914491
NHTC01000016
Gammaproteobacteria
Pseudomonas syringae LMC.P80 [NHTC]
39504
39429
-
Thr
TGT
[ENA]
¡û
>W1911568206
PCQC01000005
Gammaproteobacteria
Pseudomonas sp. MYb2 [PCQC]
391068
391143
+
Thr
TGT
[ENA]
¡û
>W1911582370
PHHD01000001
Gammaproteobacteria
Pseudomonas tolaasii NCPPB 2192 [PHHD]
1853541
1853466
-
Thr
TGT
[ENA]
¡û
>W1911671317
QGAA01000002
Gammaproteobacteria
Pseudomonas sp. CFBP13509 [QGAA]
464206
464281
+
Thr
TGT
[ENA]
¡û
>W1810071836
PEEY01000001
Gammaproteobacteria
Pseudomonas sp. 29 29 [PEEY]
3241255
3241180
-
Thr
TGT
[ENA]
¡û
>W1810204787
PODM01000008
Gammaproteobacteria
Pseudomonas sp. FW305-122 [PODM]
91707
91782
+
Thr
TGT
[ENA]
¡û
>W1810205383
PODW01000030
Gammaproteobacteria
Pseudomonas sp. GP01-A4 [PODW]
1879
1804
-
Thr
TGT
[ENA]
¡û
>W1810205704
POED01000001
Gammaproteobacteria
Pseudomonas sp. DP16D-L5 [POED]
93611
93536
-
Thr
TGT
[ENA]
¡û
>W1810207272
POFF01000004
Gammaproteobacteria
Pseudomonas sp. GW456-12-1-14-LB2 [POFF]
14497
14422
-
Thr
TGT
[ENA]
¡û
>W1810207343
POFG01000023
Gammaproteobacteria
Pseudomonas sp. FW305-3-2-15-A-R2A1 [POFG]
87504
87579
+
Thr
TGT
[ENA]
¡û
>W1810207981
POFR01000082
Gammaproteobacteria
Pseudomonas sp. MPR-R2A7 [POFR]
6328
6253
-
Thr
TGT
[ENA]
¡û
>W1810208738
POGF01000035
Gammaproteobacteria
Pseudomonas sp. GW456-L14 [POGF]
56327
56402
+
Thr
TGT
[ENA]
¡û
>W1810209549
POGT01000018
Gammaproteobacteria
Pseudomonas sp. MPR-AND1B [POGT]
6748
6823
+
Thr
TGT
[ENA]
¡û
>W1810209988
POHB01000020
Gammaproteobacteria
Pseudomonas sp. FW306-02-H06C [POHB]
75725
75650
-
Thr
TGT
[ENA]
¡û
>W1810210311
POHH01000001
Gammaproteobacteria
Pseudomonas sp. FW306-2-11AB [POHH]
75730
75655
-
Thr
TGT
[ENA]
¡û
>W1810239140
PPSD01000023
Gammaproteobacteria
Pseudomonas sp. GW531-T4 [PPSD]
8405
8330
-
Thr
TGT
[ENA]
¡û
>W1810403611
PYJM01000006
Gammaproteobacteria
Pseudomonas protegens BNJ-SS-45 [PYJM]
224131
224056
-
Thr
TGT
[ENA]
¡û
>W1810481774
QARE02000006
Gammaproteobacteria
Pseudomonas sp. RIT 409 [QARE]
291538
291613
+
Thr
TGT
[ENA]
¡û
>W1810594239
QFZI01000004
Gammaproteobacteria
Pseudomonas sp. Leaf98 [QFZI]
23365
23290
-
Thr
TGT
[ENA]
¡û
>W1810594857
QGDM01000002
Gammaproteobacteria
Pseudomonas sp. 43mfcvi1.1 43mfcvi1.1 43MFCvi1.1 [QGDM]
148322
148247
-
Thr
TGT
[ENA]
¡û
>W1810752494
QPBD01000027
Gammaproteobacteria
Pseudomonas savastanoi pv. phaseolicola 523 [QPBD]
22082
22007
-
Thr
TGT
[ENA]
¡û
>W1810752635
QPBG01000057
Gammaproteobacteria
Pseudomonas savastanoi pv. phaseolicola 526 [QPBG]
22082
22007
-
Thr
TGT
[ENA]
¡û
>W1810753662
QPCH01000021
Gammaproteobacteria
Pseudomonas cichorii 136 [QPCH]
56940
56865
-
Thr
TGT
[ENA]
¡û
>W1810755238
QPDR01000027
Gammaproteobacteria
Pseudomonas coronafaciens pv. garcae 471 [QPDR]
65447
65522
+
Thr
TGT
[ENA]
¡û
>W1810755328
QPDT01000025
Gammaproteobacteria
Pseudomonas cichorii 474 [QPDT]
57133
57058
-
Thr
TGT
[ENA]
¡û
>W1810755856
QPEF01000022
Gammaproteobacteria
Pseudomonas coronafaciens pv. garcae 486 [QPEF]
75636
75561
-
Thr
TGT
[ENA]
¡û
>C151007687
CP005970
Gammaproteobacteria
Pseudomonas syringae UMAF0158 [CP005970]
3466566
3466641
+
Thr
TGT
-
¡û
>C151083484
CP011507
Gammaproteobacteria
Pseudomonas trivialis IHBB745 [CP011507]
2830656
2830731
+
Thr
TGT
[Ensembl]
¡û
>C151088526
CP011972
Gammaproteobacteria
Pseudomonas syringae pv. actinidiae ICMP 18884 [CP011972]
321679
321604
-
Thr
TGT
-
¡û
>W10105715
ACXT01000428
Gammaproteobacteria
Pseudomonas amygdali pv. aesculi str. 2250 [ACXT]
4220
4145
-
Thr
TGT
[ENA]
¡û
>W11108035
ACXT01000428
Gammaproteobacteria
Pseudomonas amygdali pv. aesculi str. 2250 [ACXT]
4220
4145
-
Thr
TGT
[ENA]
¡û
>W11169818
AFOY01000047
Gammaproteobacteria
Pseudomonas fluorescens HK44 [AFOY]
11263
11188
-
Thr
TGT
[ENA]
¡û
>W11170382
AFPL01000004
Gammaproteobacteria
Marinobacterium stanieri S30 [AFPL]
86544
86619
+
Thr
TGT
[ENA]
¡û
>W121011895
AGNQ01000249
Gammaproteobacteria
Pseudomonas syringae pv. actinidiae PA459 [AGNQ]
3851
3776
-
Thr
TGT
[ENA]
¡û
>W121070863
AJXJ01000731
Gammaproteobacteria
Pseudomonas fluorescens NZ011 [AJXJ]
27652
27577
-
Thr
TGT
[ENA]
¡û
>W121119373
ALWP01000747
Gammaproteobacteria
Pseudomonas fluorescens NCIMB 11764 [ALWP]
30849
30774
-
Thr
TGT
[ENA]
¡û
>W1610029704
AXDA01000071
Gammaproteobacteria
Pseudomonas lactis PA4C2 [AXDA]
94618
94543
-
Thr
TGT
[ENA]
¡û
>W1610086340
CVTJ01000058
Gammaproteobacteria
Pseudomonas sp. 25 E 4 [CVTJ]
112660
112585
-
Thr
TGT
[ENA]
¡û
>W1610615945
LGLH01000050
Gammaproteobacteria
Pseudomonas syringae group genomosp. 3 pv. maculicola [LGLH]
64355
64430
+
Thr
TGT
[ENA]
¡û
>W1610616317
LGLQ01000335
Gammaproteobacteria
Pseudomonas amygdali pv. morsprunorum [LGLQ]
19925
19850
-
Thr
TGT
[ENA]
¡û
>W1610630232
LIIE01000193
Gammaproteobacteria
Pseudomonas amygdali pv. dendropanacis [LIIE]
750
675
-
Thr
TGT
[ENA]
¡û
>W1610630415
LIII01000048
Gammaproteobacteria
Pseudomonas syringae pv. broussonetiae [LIII]
6394
6319
-
Thr
TGT
[ENA]
¡û
>W1610631583
LILL01000173
Gammaproteobacteria
Pseudomonas amygdali pv. aesculi [LILL]
16797
16872
+
Thr
TGT
[ENA]
¡û
>W1610659382
LJRA01000138
Gammaproteobacteria
Pseudomonas coronafaciens pv. porri [LJRA]
424
349
-
Thr
TGT
[ENA]
¡û
>W1610698151
LLJL01000298
Gammaproteobacteria
Pseudomonas savastanoi pv. fraxini [LLJL]
36704
36779
+
Thr
TGT
[ENA]
¡û
>W1610730594
LMIY01000001
Gammaproteobacteria
Pseudomonas sp. Root9 [LMIY]
214576
214501
-
Thr
TGT
[ENA]
¡û
>W1610740832
LMQZ01000007
Gammaproteobacteria
Pseudomonas sp. Leaf434 [LMQZ]
169040
168965
-
Thr
TGT
[ENA]
¡û
>W1610760644
LNKY01000174
Gammaproteobacteria
Pseudomonas syringae group genomosp. 3 pv. tomato [LNKY]
13249
13174
-
Thr
TGT
[ENA]
¡û
>W1610917245
LSMR01000122
Gammaproteobacteria
Neptuniibacter sp. Phe_28 [LSMR]
3406
3331
-
Thr
TGT
[ENA]
¡û
>W1710027074
AXDA01000071
Gammaproteobacteria
Pseudomonas lactis PA4C2 [AXDA]
94618
94543
-
Thr
TGT
[ENA]
¡û
>W1710076150
BDAG01000004
Gammaproteobacteria
Pseudomonas migulae NBRC 103157 [BDAG]
45716
45791
+
Thr
TGT
[ENA]
¡û
>W1710509073
FMWW01000006
Gammaproteobacteria
Pseudomonas sp. NFPP12 [FMWW]
478142
478217
+
Thr
TGT
[ENA]
¡û
>W1710547255
FOCU01000002
Gammaproteobacteria
Pseudomonas sp. ok266 [FOCU]
46330
46255
-
Thr
TGT
[ENA]
¡û
>W1710563455
FOPR01000012
Gammaproteobacteria
Pseudomonas syringae [FOPR]
66242
66317
+
Thr
TGT
[ENA]
¡û
>W1710563556
FOPT01000030
Gammaproteobacteria
Pseudomonas sp. NFACC54 [FOPT]
55642
55717
+
Thr
TGT
[ENA]
¡û
>W1710602611
FUYI01000022
Gammaproteobacteria
Pseudomonas extremaustralis [FUYI]
99339
99264
-
Thr
TGT
[ENA]
¡û
>W1710737191
LGLH01000050
Gammaproteobacteria
Pseudomonas syringae group genomosp. 3 pv. maculicola [LGLH]
64355
64430
+
Thr
TGT
[ENA]
¡û
>W1710737563
LGLQ01000335
Gammaproteobacteria
Pseudomonas amygdali pv. morsprunorum [LGLQ]
19925
19850
-
Thr
TGT
[ENA]
¡û
>W1710761371
LIIE01000193
Gammaproteobacteria
Pseudomonas amygdali pv. dendropanacis [LIIE]
750
675
-
Thr
TGT
[ENA]
¡û
>W1710761554
LIII01000048
Gammaproteobacteria
Pseudomonas syringae pv. broussonetiae [LIII]
6394
6319
-
Thr
TGT
[ENA]
¡û
>W1710763188
LILL01000173
Gammaproteobacteria
Pseudomonas amygdali pv. aesculi [LILL]
16797
16872
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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