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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.307179 (35 seq.)
>W1710785243
LJHR01000029
Alphaproteobacteria
alpha proteobacterium AAP38 [LJHR]
1862
1937
+
Ala
TGC
[ENA]
¡û
>W131230295
AUHM01000026
Alphaproteobacteria
Inquilinus limosus DSM 16000 [AUHM]
3501
3426
-
Ala
TGC
[ENA]
¡û
>W131230302
AUHM01000032
Alphaproteobacteria
Inquilinus limosus DSM 16000 [AUHM]
99734
99659
-
Ala
TGC
[ENA]
¡û
>W131230308
AUHM01000044
Alphaproteobacteria
Inquilinus limosus DSM 16000 [AUHM]
41619
41544
-
Ala
TGC
[ENA]
¡û
>W131230314
AUHM01000055
Alphaproteobacteria
Inquilinus limosus DSM 16000 [AUHM]
3501
3426
-
Ala
TGC
[ENA]
¡û
>W1712081860
NHON01000002
Alphaproteobacteria
Inquilinus limosus [NHON]
2138
2213
+
Ala
TGC
[ENA]
¡û
>WENV180268977
OBEQ012019609
[OBEQ] groundwater metagenome; groundwater
429
354
-
Ala
TGC
[ENA]
¢þ
>WENV180291291
OBIV01032619
[OBIV] soil metagenome; Clay
214
139
-
Ala
TGC
[ENA]
¢þ
>WENV180299014
OBJA01881175
[OBJA] soil metagenome; sediment, water from around vicinity
93
168
+
Ala
TGC
[ENA]
¢þ
>W141065513
AQPH01000116
Alphaproteobacteria
Magnetospirillum fulvum MGU-K5 [AQPH]
3358
3283
-
Ala
TGC
[ENA]
¡û
>W141096552
AVFL01000113
Alphaproteobacteria
Skermanella stibiiresistens SB22 [AVFL]
230
305
+
Ala
TGC
[ENA]
¡û
>WENV181234758
OFEU01004323
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
470
545
+
Ala
TGC
[ENA]
¢þ
>W141241822
CAHP01000046
Alphaproteobacteria
Magnetospirillum molischianum DSM 120 [CAHP]
2197
2272
+
Ala
TGC
[ENA]
¡û
>WENV170962773
MRWF01026271
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
525
450
-
Ala
TGC
[ENA]
¢þ
>WENV170964562
MRWG01019369
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
926
851
-
Ala
TGC
[ENA]
¢þ
>PL191000806
CP030127
Alphaproteobacteria
Indioceanicola profundi SCSIO 08040 plasmid:unnamed1 (CP030127)
1068327
1068252
-
Ala
TGC
[ENA]
¡û
>C181120655
CP025611
Alphaproteobacteria
Niveispirillum cyanobacteriorum TH16 [CP025611, CP025612]
237490
237565
+
Ala
TGC
-
¡û
>C181120675
CP025611
Alphaproteobacteria
Niveispirillum cyanobacteriorum TH16 [CP025611, CP025612]
2731182
2731257
+
Ala
TGC
-
¡û
>C181120679
CP025611
Alphaproteobacteria
Niveispirillum cyanobacteriorum TH16 [CP025611, CP025612]
2930969
2931044
+
Ala
TGC
-
¡û
>C181120706
CP025612
Alphaproteobacteria
Niveispirillum cyanobacteriorum TH16 [CP025611, CP025612]
1180253
1180178
-
Ala
TGC
-
¡û
>C191071837
CP030126
Alphaproteobacteria
Indioceanicola profundi SCSIO 08040 [CP030126]
469090
469165
+
Ala
TGC
-
¡û
>C191071840
CP030126
Alphaproteobacteria
Indioceanicola profundi SCSIO 08040 [CP030126]
890018
890093
+
Ala
TGC
-
¡û
>C191071858
CP030126
Alphaproteobacteria
Indioceanicola profundi SCSIO 08040 [CP030126]
2588348
2588273
-
Ala
TGC
-
¡û
>W09118261
ACCU01000015
Alphaproteobacteria
Roseibium alexandrii DFL-11 [ACCU]
1263217
1263292
+
Ala
TGC
[ENA]
¡û
>W09118264
ACCU01000015
Alphaproteobacteria
Roseibium alexandrii DFL-11 [ACCU]
1344850
1344925
+
Ala
TGC
[ENA]
¡û
>W09118274
ACCU01000015
Alphaproteobacteria
Roseibium alexandrii DFL-11 [ACCU]
643813
643738
-
Ala
TGC
[ENA]
¡û
>W1910548207
FZOI01000046
Alphaproteobacteria
Azospirillum sp. RU38E [FZOI]
2042
2117
+
Ala
TGC
[ENA]
¡û
>W1910548210
FZOI01000058
Alphaproteobacteria
Azospirillum sp. RU38E [FZOI]
2042
2117
+
Ala
TGC
[ENA]
¡û
>W1910548589
FZOP01000045
Alphaproteobacteria
Azospirillum sp. RU37A [FZOP]
2042
2117
+
Ala
TGC
[ENA]
¡û
>W1910548592
FZOP01000057
Alphaproteobacteria
Azospirillum sp. RU37A [FZOP]
2042
2117
+
Ala
TGC
[ENA]
¡û
>W1911139299
NOXU01000016
Alphaproteobacteria
Niveispirillum lacus 1·î14Æü [NOXU]
59442
59517
+
Ala
TGC
[ENA]
¡û
>W1510766228
JANX01000434
Alphaproteobacteria
Inquilinus limosus MP06 [JANX]
3469
3394
-
Ala
TGC
[ENA]
¡û
>W1610649049
LJHR01000029
Alphaproteobacteria
alpha proteobacterium AAP38 [LJHR]
1862
1937
+
Ala
TGC
[ENA]
¡û
>W1710516830
FNCV01000025
Alphaproteobacteria
Roseospirillum parvum [FNCV]
2285
2360
+
Ala
TGC
[ENA]
¡û
>W1710540227
FNWO01000026
Alphaproteobacteria
Magnetospirillum fulvum [FNWO]
1573
1648
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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