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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.307215 (80 seq.)
>W1711297357
MADW01000052
Mycoplasmatota
Mycoplasmoides gallisepticum [MADW]
7454
7529
+
Thr
TGT
[ENA]
¡û
>W1711299068
MAFU01000010
Mycoplasmatota
Mycoplasmoides gallisepticum [MAFU]
20717
20792
+
Thr
TGT
[ENA]
¡û
>W1711299115
MAFV01000042
Mycoplasmatota
Mycoplasmoides gallisepticum [MAFV]
7272
7347
+
Thr
TGT
[ENA]
¡û
>W1711299127
MAFW01000034
Mycoplasmatota
Mycoplasmoides gallisepticum [MAFW]
7441
7516
+
Thr
TGT
[ENA]
¡û
>W1711300294
MAGQ01000010
Mycoplasmatota
Mycoplasmoides gallisepticum [MAGQ]
88592
88667
+
Thr
TGT
[ENA]
¡û
>W1711300315
MAGR01000039
Mycoplasmatota
Mycoplasmoides gallisepticum [MAGR]
18483
18558
+
Thr
TGT
[ENA]
¡û
>W1711313430
MATM01000057
Mycoplasmatota
Mycoplasmoides gallisepticum [MATM]
3774
3699
-
Thr
TGT
[ENA]
¡û
>W1711313439
MATN01000013
Mycoplasmatota
Mycoplasmoides gallisepticum [MATN]
7496
7571
+
Thr
TGT
[ENA]
¡û
>W131221290
AUAI01000012
Mycoplasmatota
Mycoplasmoides gallisepticum ATCC 19610 [AUAI]
18198
18123
-
Thr
TGT
[ENA]
¡û
>C013443
AE015450
Mycoplasmatota
Mycoplasmoides gallisepticum str. R[low] [AE015450]
170220
170295
+
Thr
TGT
[Ensembl]
¡û
>C013884
BA000026
Mycoplasmatota
Malacoplasma penetrans HF-2 [BA000026]
163992
164067
+
Thr
TGT
[Ensembl]
¡û
>WENV180321973
OBKR01000866
[OBKR] human gut metagenome; feces
29993
29918
-
Thr
TGT
[ENA]
¢þ
>WENV180336855
OBLG01006289
[OBLG] human gut metagenome; human gut
4636
4561
-
Thr
TGT
[ENA]
¢þ
>WENV180828889
ODKA01032748
[ODKA] human metagenome; G_DNA_Stool
165
240
+
Thr
TGT
[ENA]
¢þ
>WENV180886258
ODME01038310
[ODME] human metagenome; G_DNA_Stool
173
248
+
Thr
TGT
[ENA]
¢þ
>WENV180942065
ODTZ01038014
[ODTZ] human metagenome; G_DNA_Stool
173
248
+
Thr
TGT
[ENA]
¢þ
>WENV180969960
ODUU01001061
[ODUU] human metagenome; G_DNA_Stool
29992
29917
-
Thr
TGT
[ENA]
¢þ
>WENV181230402
OFEK01000845
[OFEK] activated sludge metagenome; Anaerobic digester
147
222
+
Thr
TGT
[ENA]
¢þ
>W141142571
AWQU01000079
Mycoplasmatota
Malacoplasma iowae DK-CPA [AWQU]
9561
9486
-
Thr
TGT
[ENA]
¡û
>WENV181485760
OGFM01014240
[OGFM] metagenome; Human gut stool
1204
1129
-
Thr
TGT
[ENA]
¢þ
>WENV181544566
OGIG01000581
[OGIG] metagenome; Human gut stool
31302
31227
-
Thr
TGT
[ENA]
¢þ
>WENV181622213
OGMF01073832
[OGMF] metagenome; Human gut stool
607
682
+
Thr
TGT
[ENA]
¢þ
>WENV181684072
OGOV01003803
[OGOV] human gut metagenome; faeces
145
220
+
Thr
TGT
[ENA]
¢þ
>WENV181748815
OGQO01008176
[OGQO] human gut metagenome; faeces
607
682
+
Thr
TGT
[ENA]
¢þ
>WENV181772353
OGRD01001831
[OGRD] human gut metagenome; faeces
7243
7168
-
Thr
TGT
[ENA]
¢þ
>WENV181910713
OGYC01035813
[OGYC] human gut metagenome; faeces
864
789
-
Thr
TGT
[ENA]
¢þ
>WENV182018776
OHBX01005093
[OHBX] human gut metagenome; feces
2638
2713
+
Thr
TGT
[ENA]
¢þ
>WENV182028805
OHCP01013436
[OHCP] human gut metagenome; feces
612
687
+
Thr
TGT
[ENA]
¢þ
>WENV182038317
OHDE01005800
[OHDE] human gut metagenome; feces
612
687
+
Thr
TGT
[ENA]
¢þ
>W141203229
AZHZ01000010
Mycoplasmatota
Mycoplasmoides pirum MPI25960 [AZHZ]
54847
54772
-
Thr
TGT
[ENA]
¡û
>WENV182248293
OHSO01009650
[OHSO] human gut metagenome; feces
1138
1063
-
Thr
TGT
[ENA]
¢þ
>WENV182414217
OIFY01069665
[OIFY] human gut metagenome; human gut
115
190
+
Thr
TGT
[ENA]
¢þ
>WENV182417402
OIGD01019948
[OIGD] human gut metagenome; human gut
607
682
+
Thr
TGT
[ENA]
¢þ
>WENV182525874
OIWT01005253
[OIWT] human gut metagenome; faeces
5588
5513
-
Thr
TGT
[ENA]
¢þ
>WENV182537723
OIXH01015807
[OIXH] human gut metagenome; faeces
2353
2428
+
Thr
TGT
[ENA]
¢þ
>WENV182639063
OJLA01037258
[OJLA] metagenome; faeces
369
294
-
Thr
TGT
[ENA]
¢þ
>W141275842
JADI01000006
Mycoplasmatota
[Mycoplasma] imitans ATCC 51306 [JADI]
76575
76500
-
Thr
TGT
[ENA]
¡û
>WENV182915082
OKTR01001491
[OKTR] human gut metagenome; feces
688
613
-
Thr
TGT
[ENA]
¢þ
>WENV182969458
OKXB01028860
[OKXB] human gut metagenome; human gut
607
682
+
Thr
TGT
[ENA]
¢þ
>WENV183039903
OLGB01024205
[OLGB] human gut metagenome; faeces
195
270
+
Thr
TGT
[ENA]
¢þ
>WENV183315969
OLVS01002131
[OLVS] human gut metagenome; feces
1233
1308
+
Thr
TGT
[ENA]
¢þ
>WENV183342172
OLWN01002944
[OLWN] human gut metagenome; feces
135
210
+
Thr
TGT
[ENA]
¢þ
>WENV183353864
OLXB01002684
[OLXB] human gut metagenome; feces
4209
4134
-
Thr
TGT
[ENA]
¢þ
>WENV183373738
OLXY01002932
[OLXY] human gut metagenome; feces
135
210
+
Thr
TGT
[ENA]
¢þ
>WENV183380857
OLYI01022794
[OLYI] human gut metagenome; feces
755
680
-
Thr
TGT
[ENA]
¢þ
>WENV183381603
OLYJ01020495
[OLYJ] human gut metagenome; feces
569
644
+
Thr
TGT
[ENA]
¢þ
>WENV183401295
OLZT01008968
[OLZT] human gut metagenome; feces
1117
1042
-
Thr
TGT
[ENA]
¢þ
>WENV183471124
OMEK01035337
[OMEK] human gut metagenome; feces
173
248
+
Thr
TGT
[ENA]
¢þ
>WENV183575831
OOCI01009653
[OOCI] human gut metagenome; human gut
607
682
+
Thr
TGT
[ENA]
¢þ
>WENV170051640
CDZB01076290
[CDZB] gut metagenome; human stools
876
801
-
Thr
TGT
[ENA]
¢þ
>WENV170101571
CEAR01038158
[CEAR] gut metagenome; human stools
646
721
+
Thr
TGT
[ENA]
¢þ
>WENV170109282
CECA01071441
[CECA] gut metagenome; human stools
1139
1064
-
Thr
TGT
[ENA]
¢þ
>WENV170110610
CECF01036140
[CECF] gut metagenome; human stools
222
297
+
Thr
TGT
[ENA]
¢þ
>C191056617
CP028146
Mycoplasmatota
Mycoplasmoides gallisepticum f99 lab strain [CP028146]
163658
163733
+
Thr
TGT
-
¡û
>C191056646
CP028147
Mycoplasmatota
Mycoplasmoides gallisepticum f99 Avipro vaccine [CP028147]
163658
163733
+
Thr
TGT
-
¡û
>C191218163
LR214962
Mycoplasmatota
Mycoplasmopsis fermentans NCTC10117 [LR214955, LR214962]
787972
788047
+
Thr
TGT
-
¡û
>C191218424
LR215023
Mycoplasmatota
Malacoplasma iowae NCTC10185 [LR215023]
991898
991823
-
Thr
TGT
-
¡û
>C191224839
LS991952
Mycoplasmatota
Mycoplasmoides gallisepticum NCTC10115 [LS991952]
168407
168482
+
Thr
TGT
-
¡û
>W141701795
JMKZ01000001
Mycoplasmatota
Mycoplasmoides pirum ATCC 25960 [JMKZ]
581249
581174
-
Thr
TGT
[ENA]
¡û
>W141732182
JNJU01000001
Mycoplasmatota
Mycoplasmoides alvi ATCC 29626 [JNJU]
85868
85943
+
Thr
TGT
[ENA]
¡û
>C141010530
CP006916
Mycoplasmatota
Mycoplasmoides gallisepticum S6 [CP006916]
174988
175063
+
Thr
TGT
[Ensembl]
¡û
>C10109378
CP001873
Mycoplasmatota
Mycoplasmoides gallisepticum str. F [CP001873]
166816
166891
+
Thr
TGT
[Ensembl]
¡û
>C10109407
CP001872
Mycoplasmatota
Mycoplasmoides gallisepticum str. R[high] [CP001872]
170221
170296
+
Thr
TGT
[Ensembl]
¡û
>W11160685
AFFR01000004
Mycoplasmatota
Mycoplasmoides gallisepticum S6 [AFFR]
310319
310394
+
Thr
TGT
[ENA]
¡û
>W11178971
AGFP01000019
Mycoplasmatota
Malacoplasma iowae 695 [AGFP]
638
563
-
Thr
TGT
[ENA]
¡û
>C121013981
CP003506
Mycoplasmatota
Mycoplasmoides gallisepticum VA94_7994-1-7P [CP003506]
169020
169095
+
Thr
TGT
[Ensembl]
¡û
>C121014009
CP003507
Mycoplasmatota
Mycoplasmoides gallisepticum NC95_13295-2-2P [CP003507]
169021
169096
+
Thr
TGT
[Ensembl]
¡û
>C121014037
CP003509
Mycoplasmatota
Mycoplasmoides gallisepticum NY01_2001.047-5-1P [CP003509]
169012
169087
+
Thr
TGT
[Ensembl]
¡û
>C121014065
CP003510
Mycoplasmatota
Mycoplasmoides gallisepticum WI01_2001.043-13-2P [CP003510]
169027
169102
+
Thr
TGT
[Ensembl]
¡û
>C121014093
CP003511
Mycoplasmatota
Mycoplasmoides gallisepticum NC06_2006.080-5-2P [CP003511]
169441
169516
+
Thr
TGT
[Ensembl]
¡û
>C131003941
CP003508
Mycoplasmatota
Mycoplasmoides gallisepticum NC96_1596-4-2P [CP003508]
169027
169102
+
Thr
TGT
[Ensembl]
¡û
>C131003969
CP003512
Mycoplasmatota
Mycoplasmoides gallisepticum CA06_2006.052-5-2P [CP003512]
169007
169082
+
Thr
TGT
[Ensembl]
¡û
>C131003997
CP003513
Mycoplasmatota
Mycoplasmoides gallisepticum NC08_2008.031-4-3P [CP003513]
169362
169437
+
Thr
TGT
[Ensembl]
¡û
>W1611052403
MAFU01000010
Mycoplasmatota
Mycoplasmoides gallisepticum [MAFU]
20717
20792
+
Thr
TGT
[ENA]
¡û
>W1611052450
MAFV01000042
Mycoplasmatota
Mycoplasmoides gallisepticum [MAFV]
7272
7347
+
Thr
TGT
[ENA]
¡û
>W1611052462
MAFW01000034
Mycoplasmatota
Mycoplasmoides gallisepticum [MAFW]
7441
7516
+
Thr
TGT
[ENA]
¡û
>W1611052578
MAGQ01000010
Mycoplasmatota
Mycoplasmoides gallisepticum [MAGQ]
88592
88667
+
Thr
TGT
[ENA]
¡û
>W1611052599
MAGR01000039
Mycoplasmatota
Mycoplasmoides gallisepticum [MAGR]
18483
18558
+
Thr
TGT
[ENA]
¡û
>W1611058483
MATM01000057
Mycoplasmatota
Mycoplasmoides gallisepticum [MATM]
3774
3699
-
Thr
TGT
[ENA]
¡û
>W1611058492
MATN01000013
Mycoplasmatota
Mycoplasmoides gallisepticum [MATN]
7496
7571
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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