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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.307245 (98 seq.)
>W1711066604
LSCZ01000025
Actinomycetota
Corynebacterium sp. DNF00584 [LSCZ]
49984
50059
+
Thr
CGT
[ENA]
¡û
>W1711080519
LSRB01000011
Actinomycetota
Corynebacterium sp. CMW7794 [LSRB]
176117
176042
-
Thr
CGT
[ENA]
¡û
>W1711092521
LTEE01000011
Actinomycetota
Corynebacterium sp. HMSC076C10 [LTEE]
17840
17767
-
Thr
CGT
[ENA]
¡û
>W1711093860
LTFJ01000013
Actinomycetota
Corynebacterium sp. HMSC064E08 [LTFJ]
219580
219507
-
Thr
CGT
[ENA]
¡û
>W1711096279
LTHP01000124
Actinomycetota
Corynebacterium sp. HMSC077C02 [LTHP]
19477
19404
-
Thr
CGT
[ENA]
¡û
>W1711096285
LTHQ01000002
Actinomycetota
Corynebacterium sp. HMSC063G05 [LTHQ]
100305
100232
-
Thr
CGT
[ENA]
¡û
>W1711096425
LTHS01000059
Actinomycetota
Corynebacterium sp. HMSC077B05 [LTHS]
50055
50130
+
Thr
CGT
[ENA]
¡û
>W1711097559
LTIU01000035
Actinomycetota
Corynebacterium sp. HMSC064H12 [LTIU]
8946
9019
+
Thr
CGT
[ENA]
¡û
>W1711098022
LTJF01000012
Actinomycetota
Corynebacterium sp. HMSC063A05 [LTJF]
355708
355635
-
Thr
CGT
[ENA]
¡û
>W1711098575
LTJR01000030
Actinomycetota
Corynebacterium sp. HMSC074C11 [LTJR]
25348
25421
+
Thr
CGT
[ENA]
¡û
>W1711099081
LTKD01000044
Actinomycetota
Corynebacterium sp. HMSC077G07 [LTKD]
33850
33923
+
Thr
CGT
[ENA]
¡û
>W1711099137
LTKF01000051
Actinomycetota
Corynebacterium sp. HMSC072G08 [LTKF]
180
105
-
Thr
CGT
[ENA]
¡û
>W1711099352
LTKK01000035
Actinomycetota
Corynebacterium sp. HMSC055G02 [LTKK]
38098
38025
-
Thr
CGT
[ENA]
¡û
>W1711102262
LTNP01000011
Actinomycetota
Corynebacterium sp. HMSC075F02 [LTNP]
109017
108944
-
Thr
CGT
[ENA]
¡û
>W1711102298
LTNQ01000004
Actinomycetota
Corynebacterium sp. HMSC074C05 [LTNQ]
39696
39623
-
Thr
CGT
[ENA]
¡û
>W1711102361
LTNR01000021
Actinomycetota
Corynebacterium sp. HMSC074C03 [LTNR]
8933
9008
+
Thr
CGT
[ENA]
¡û
>W1711102362
LTNR01000021
Actinomycetota
Corynebacterium sp. HMSC074C03 [LTNR]
12490
12563
+
Thr
CGT
[ENA]
¡û
>W1711102402
LTNS01000004
Actinomycetota
Corynebacterium sp. HMSC073B01 [LTNS]
106283
106210
-
Thr
CGT
[ENA]
¡û
>W1711102462
LTNT01000005
Actinomycetota
Corynebacterium sp. HMSC072D01 [LTNT]
17413
17486
+
Thr
CGT
[ENA]
¡û
>W1711102550
LTNU01000068
Actinomycetota
Corynebacterium sp. HMSC072B09 [LTNU]
52396
52469
+
Thr
CGT
[ENA]
¡û
>W1711102558
LTNV01000005
Actinomycetota
Corynebacterium sp. HMSC061H03 [LTNV]
3929
4002
+
Thr
CGT
[ENA]
¡û
>W1711103262
LTOO01000006
Actinomycetota
Corynebacterium sp. HMSC073H12 [LTOO]
81932
81859
-
Thr
CGT
[ENA]
¡û
>W1711103462
LTOS01000043
Actinomycetota
Corynebacterium sp. HMSC072B08 [LTOS]
64393
64466
+
Thr
CGT
[ENA]
¡û
>W1711107017
LTSJ01000034
Actinomycetota
Corynebacterium sp. HMSC064E07 [LTSJ]
109105
109032
-
Thr
CGT
[ENA]
¡û
>W1711107370
LTSS01000119
Actinomycetota
Corynebacterium sp. HMSC073D01 [LTSS]
17152
17227
+
Thr
CGT
[ENA]
¡û
>W1711108482
LTTU01000035
Actinomycetota
Corynebacterium sp. HMSC065A05 [LTTU]
51455
51530
+
Thr
CGT
[ENA]
¡û
>W1711109378
LTUP01000049
Actinomycetota
Corynebacterium sp. HMSC077D10 [LTUP]
14897
14822
-
Thr
CGT
[ENA]
¡û
>W1711110054
LTVE01000025
Actinomycetota
Corynebacterium sp. HMSC070B05 [LTVE]
17601
17674
+
Thr
CGT
[ENA]
¡û
>W1711113449
LTYH01000022
Actinomycetota
Corynebacterium sp. HMSC064E10 [LTYH]
70528
70453
-
Thr
CGT
[ENA]
¡û
>W1711114849
LTZQ01000019
Actinomycetota
Corynebacterium sp. HMSC11H10 [LTZQ]
12453
12378
-
Thr
CGT
[ENA]
¡û
>W1711114949
LTZS01000047
Actinomycetota
Corynebacterium sp. HMSC14H10 [LTZS]
51464
51389
-
Thr
CGT
[ENA]
¡û
>W1711186812
LWON01000011
Actinomycetota
Corynebacterium sp. HMSC14B06 [LWON]
34069
34142
+
Thr
CGT
[ENA]
¡û
>W1711187911
LWPW01000095
Actinomycetota
Corynebacterium sp. HMSC074C04 [LWPW]
16809
16736
-
Thr
CGT
[ENA]
¡û
>W1711427596
MIFV01000008
Actinomycetota
Corynebacterium amycolatum [MIFV]
17702
17775
+
Thr
CGT
[ENA]
¡û
>W1711507483
MKXS01000006
Actinomycetota
Corynebacterium sp. S1S1 [MKXS]
17927
18000
+
Thr
CGT
[ENA]
¡û
>W1711724027
MTPT01000042
Actinomycetota
Corynebacterium amycolatum [MTPT]
18056
17983
-
Thr
CGT
[ENA]
¡û
>W1711772088
MVGS01000076
Actinomycetota
Trueperella pyogenes [MVGS]
34934
35009
+
Thr
CGT
[ENA]
¡û
>C171001913
CP009246
Actinomycetota
Corynebacterium flavescens OJ8 [CP009246]
335163
335238
+
Thr
CGT
-
¡û
>W131204418
ATBY01000017
Actinomycetota
Corynebacterium pyruviciproducens ATCC BAA-1742 [ATBY]
393131
393056
-
Thr
CGT
[ENA]
¡û
>W131217131
ATWL01000009
Actinomycetota
Ruania albidiflava DSM 18029 [ATWL]
99894
99969
+
Thr
CGT
[ENA]
¡û
>W131000445
AGEM01000007
Actinomycetota
Corynebacterium sp. HFH0082 [AGEM]
34280
34353
+
Thr
CGT
[ENA]
¡û
>W131159266
AQUX01000002
Actinomycetota
Corynebacterium doosanense DSM 45436 [AQUX]
407259
407184
-
Thr
CGT
[ENA]
¡û
>WENV180554242
OCJN01000028
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
101709
101636
-
Thr
CGT
[ENA]
¢þ
>WENV181326336
OFLL01000131
[OFLL] metagenome; faeces
22838
22763
-
Thr
CGT
[ENA]
¢þ
>WENV182628989
OJKR01000654
[OJKR] metagenome; surface
3677
3604
-
Thr
CGT
[ENA]
¢þ
>WENV182636092
OJKZ01000255
[OJKZ] metagenome; surface
17977
17904
-
Thr
CGT
[ENA]
¢þ
>WENV182640360
OJLB01004358
[OJLB] metagenome; surface
857
784
-
Thr
CGT
[ENA]
¢þ
>WENV182641830
OJLK01002267
[OJLK] metagenome; surface
1029
956
-
Thr
CGT
[ENA]
¢þ
>WENV182643309
OJLU01000562
[OJLU] metagenome; surface
169
96
-
Thr
CGT
[ENA]
¢þ
>WENV182643746
OJLW01000862
[OJLW] metagenome; surface
5211
5138
-
Thr
CGT
[ENA]
¢þ
>WENV182644947
OJLY01001023
[OJLY] metagenome; surface
8006
8079
+
Thr
CGT
[ENA]
¢þ
>WENV182645297
OJLY01008183
[OJLY] metagenome; surface
1054
1129
+
Thr
CGT
[ENA]
¢þ
>WENV182646237
OJMA01000510
[OJMA] metagenome; surface
5148
5075
-
Thr
CGT
[ENA]
¢þ
>WENV182671663
OJNM01000983
[OJNM] metagenome; surface
3730
3803
+
Thr
CGT
[ENA]
¢þ
>WENV182837576
OKGJ01000634
[OKGJ] human gut metagenome; human gut
2051
1978
-
Thr
CGT
[ENA]
¢þ
>W141284183
JALQ01000038
Actinomycetota
Trueperella pyogenes MS249 [JALQ]
4349
4274
-
Thr
CGT
[ENA]
¡û
>C181056550
CP022054
Actinomycetota
Corynebacterium jeikeium FDAARGOS_328 [CP022054]
2227335
2227408
+
Thr
CGT
-
¡û
>W09113380
ABYP01000003
Actinomycetota
Corynebacterium glucuronolyticum ATCC 51867 [ABYP]
136040
135965
-
Thr
CGT
[ENA]
¡û
>C181168807
CP028833
Actinomycetota
Trueperella pyogenes Arash114 [CP028833]
1793731
1793806
+
Thr
CGT
-
¡û
>C181171304
CP029001
Actinomycetota
Trueperella pyogenes TP4479 [CP029001]
756684
756609
-
Thr
CGT
-
¡û
>C181171522
CP029004
Actinomycetota
Trueperella pyogenes TP-2849 [CP029004]
1177432
1177357
-
Thr
CGT
-
¡û
>W09123825
ACHF01000026
Actinomycetota
Corynebacterium glucuronolyticum ATCC 51866 [ACHF]
16800
16875
+
Thr
CGT
[ENA]
¡û
>C191011721
CP014619
Actinomycetota
Frondihabitans sp. 762G35 [CP014619]
2182161
2182086
-
Thr
CGT
-
¡û
>C191114700
CP033902
Actinomycetota
Trueperella pyogenes TP1 [CP033902]
2044239
2044314
+
Thr
CGT
-
¡û
>C191114735
CP033903
Actinomycetota
Trueperella pyogenes TP2 [CP033903]
1104901
1104976
+
Thr
CGT
-
¡û
>C191114807
CP033904
Actinomycetota
Trueperella pyogenes TP3 [CP033904]
1730819
1730744
-
Thr
CGT
-
¡û
>C191114829
CP033905
Actinomycetota
Trueperella pyogenes TP4 [CP033905]
1704379
1704454
+
Thr
CGT
-
¡û
>W141563943
JIAJ01000002
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [JIAJ]
261732
261807
+
Thr
CGT
[ENA]
¡û
>W1910182655
BJNB01000063
Actinomycetota
Corynebacterium flavescens NBRC 14136 [BJNB]
246
173
-
Thr
CGT
[ENA]
¡û
>W1911630671
PTJO01000004
Actinomycetota
Corynebacterium alimapuense CCUG 69366 [PTJO]
342325
342252
-
Thr
CGT
[ENA]
¡û
>W1911783433
QXTH01000001
Actinomycetota
Antribacter gilvus CFH 30434 [QXTH]
338263
338337
+
Thr
CGT
[ENA]
¡û
>W1810085256
PESV01000003
Actinomycetota
Trueperella pyogenes Bu5 [PESV]
237322
237247
-
Thr
CGT
[ENA]
¡û
>W1810187384
PKHO01000001
Actinomycetota
Corynebacterium pyruviciproducens UMB0763 [PKHO]
28058
28133
+
Thr
CGT
[ENA]
¡û
>W1810187627
PKHS01000007
Actinomycetota
Corynebacterium amycolatum UMB0042 [PKHS]
135511
135584
+
Thr
CGT
[ENA]
¡û
>W1810187665
PKHT01000008
Actinomycetota
Corynebacterium amycolatum UMB0338 [PKHT]
98457
98384
-
Thr
CGT
[ENA]
¡û
>W1810484091
QASM01000003
Actinomycetota
Trueperella pyogenes SH01 [QASM]
93041
92966
-
Thr
CGT
[ENA]
¡û
>W1810514217
QBUG01000010
Actinomycetota
Promicromonospora sp. AC04 [QBUG]
246189
246264
+
Thr
CGT
[ENA]
¡û
>C151012218
CP006764
Actinomycetota
Corynebacterium doosanense CAU 212 = DSM 45436 [CP006764]
331714
331789
+
Thr
CGT
[Ensembl]
¡û
>C151015783
CP007003
Actinomycetota
Trueperella pyogenes TP8 [CP007003]
2107056
2106981
-
Thr
CGT
[Ensembl]
¡û
>C151026360
CP007519
Actinomycetota
Trueperella pyogenes TP6375 [CP007519]
1793834
1793909
+
Thr
CGT
[Ensembl]
¡û
>C151034695
CP007790
Actinomycetota
Corynebacterium marinum DSM 44953 [CP007790]
253205
253280
+
Thr
CGT
[Ensembl]
¡û
>C151039859
CP008913
Actinomycetota
Corynebacterium sp. ATCC 6931 [CP008913]
1494579
1494654
+
Thr
CGT
[Ensembl]
¡û
>C151096888
CP012649
Actinomycetota
Trueperella pyogenes 2012CQ-ZSH [CP012649]
480265
480190
-
Thr
CGT
-
¡û
>W1511442747
JUSD01000001
Actinomycetota
Corynebacterium sp. 805_CJEI 805_CJEI [JUSD]
35919
35992
+
Thr
CGT
[ENA]
¡û
>W1511457785
JVIP01000007
Actinomycetota
Corynebacterium sp. 401_CJEI 401_CJEI [JVIP]
8145
8218
+
Thr
CGT
[ENA]
¡û
>W1511463598
JVOW01000013
Actinomycetota
Corynebacterium sp. 239_CJEI 239_CJEI [JVOW]
4889
4814
-
Thr
CGT
[ENA]
¡û
>W1511463609
JVOW01000030
Actinomycetota
Corynebacterium sp. 239_CJEI 239_CJEI [JVOW]
96525
96452
-
Thr
CGT
[ENA]
¡û
>W1511464296
JVPT01000024
Actinomycetota
Corynebacterium sp. 212_CJEI 212_CJEI [JVPT]
8999
9072
+
Thr
CGT
[ENA]
¡û
>W1511469455
JVVM01000016
Actinomycetota
Corynebacterium vitaeruminis 1285_CVIT [JVVM]
97104
97031
-
Thr
CGT
[ENA]
¡û
>W1511476418
JWEP01000030
Actinomycetota
Corynebacterium urealyticum 1055_CURE [JWEP]
17832
17905
+
Thr
CGT
[ENA]
¡û
>C161073138
CP014513
Actinomycetota
Frondihabitans sp. PAMC 28766 [CP014513]
3859202
3859129
-
Thr
CGT
[Ensembl]
¡û
>C131005377
CP003697
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [CP003697]
388179
388254
+
Thr
CGT
[Ensembl]
¡û
>W1610507460
FLTI01000012
Actinomycetota
Corynebacterium phoceense MC1 [FLTI]
139526
139451
-
Thr
CGT
[ENA]
¡û
>W1610907174
LSCZ01000025
Actinomycetota
Corynebacterium sp. DNF00584 [LSCZ]
49984
50059
+
Thr
CGT
[ENA]
¡û
>W1610919386
LSRB01000011
Actinomycetota
Corynebacterium sp. CMW7794 [LSRB]
176117
176042
-
Thr
CGT
[ENA]
¡û
>W1710083207
BDJE01000028
Actinomycetota
Nocardioides sp. PD653-B2 [BDJE]
19965
19890
-
Thr
CGT
[ENA]
¡û
>W1710499678
FLTI01000012
Actinomycetota
Corynebacterium phoceense MC1 [FLTI]
139526
139451
-
Thr
CGT
[ENA]
¡û
>W1710605199
FWWS01000002
Actinomycetota
Corynebacterium glucuronolyticum [FWWS]
228939
229014
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK