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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.307364 (18 seq.)
>W1711272456
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
409222
409297
+
Lys
TTT
[ENA]
¡û
>C171019768
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
853347
853272
-
Lys
TTT
-
¡û
>C171063643
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
751883
751808
-
Lys
TTT
-
¡û
>C171100373
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
732469
732394
-
Lys
TTT
-
¡û
>C171100418
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
690147
690072
-
Lys
TTT
-
¡û
>C007711
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
832929
832857
-
Lys
TTT
[Ensembl]
¡û
>W08002833
ABFQ01000001
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
65413
65488
+
Lys
TTT
[ENA]
¡û
>WENV170659009
JXWO01000030
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
40711
40786
+
Lys
TTT
[ENA]
¢þ
>C181003157
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
714477
714402
-
Lys
TTT
-
¡û
>C141007788
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
735236
735161
-
Lys
TTT
[Ensembl]
¡û
>W1810266200
PQVQ01000023
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
466465
466390
-
Lys
TTT
[ENA]
¡û
>C151003231
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
713861
713786
-
Lys
TTT
[Ensembl]
¡û
>C151015149
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
754628
754553
-
Lys
TTT
[Ensembl]
¡û
>C151015195
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
795873
795798
-
Lys
TTT
[Ensembl]
¡û
>C10105278
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
726099
726024
-
Lys
TTT
[Ensembl]
¡û
>W1610521066
JGYD01000029
Chloroflexota
Dehalococcoides mccartyi [JGYD]
99394
99467
+
Lys
TTT
[ENA]
¡û
>W1611031984
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
409222
409297
+
Lys
TTT
[ENA]
¡û
>W1710617316
JGYD01000029
Chloroflexota
Dehalococcoides mccartyi [JGYD]
99394
99467
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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