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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.307646 (28 seq.)
>W1711354427
MDFG01000006
Actinomycetota
Streptomyces hygroscopicus sporocinereus [MDFG]
276535
276462
-
Arg
ACG
[ENA]
¡û
>W1711748887
MUMC01000450
Actinomycetota
Streptomyces rhizosphaericus [MUMC]
3674
3747
+
Arg
ACG
[ENA]
¡û
>W1711750776
MUNE01000547
Actinomycetota
Streptomyces milbemycinicus [MUNE]
1947
1872
-
Arg
ACG
[ENA]
¡û
>C171081614
CP018627
Actinomycetota
Streptomyces hygroscopicus XM201 [CP018627]
6583237
6583164
-
Arg
ACG
-
¡û
>C171094742
CP019458
Actinomycetota
Streptomyces autolyticus CGMCC0516 [CP019458]
5589022
5588949
-
Arg
ACG
-
¡û
>W131098681
AORZ01000026
Actinomycetota
Streptomyces mobaraensis NBRC 13819 = DSM 40847 [AORZ]
38090
38163
+
Arg
ACG
[ENA]
¡û
>WENV180343892
OBLK01130119
[OBLK] soil metagenome; Clay
374
447
+
Arg
ACG
[ENA]
¢þ
>WENV183749857
PPFU01222597
[PPFU] hypolithon metagenome; Antarctic Hypolithon
3698
3624
-
Arg
ACG
[ENA]
¢þ
>C181092786
CP023992
Actinomycetota
Streptomyces malaysiensis DSM 4137 [CP023992]
4821057
4820984
-
Arg
ACG
-
¡û
>C181110732
CP025018
Actinomycetota
Streptomyces sp. M56 [CP025018]
5922006
5922079
+
Arg
ACG
-
¡û
>C191020486
CP022545
Actinomycetota
Streptomyces sp. 11-1-2 [CP022545]
5671647
5671574
-
Arg
ACG
-
¡û
>W141758029
JNYI01001109
Actinomycetota
Goodfellowiella coeruleoviolacea [JNYI]
2373
2298
-
Arg
ACG
[ENA]
¡û
>W141773372
JOIK01000011
Actinomycetota
Streptomyces hygroscopicus subsp. hygroscopicus [JOIK]
110271
110198
-
Arg
ACG
[ENA]
¡û
>W1910179266
BJHV01000001
Actinomycetota
Streptomyces antimycoticus NBRC 12839 [BJHV]
5268813
5268740
-
Arg
ACG
[ENA]
¡û
>W1910179327
BJHW01000001
Actinomycetota
Streptomyces violaceusniger NBRC 13459 [BJHW]
5875260
5875187
-
Arg
ACG
[ENA]
¡û
>W1910870365
NCSM01000010
Actinomycetota
Streptomyces sp. NBS 14/10 [NCSM]
17091
17017
-
Arg
ACG
[ENA]
¡û
>W1911788755
QYCY01000001
Actinomycetota
Streptomyces rapamycinicus NRRL 5491 [QYCY]
4436213
4436140
-
Arg
ACG
[ENA]
¡û
>W1810115679
PHNC01000031
Actinomycetota
Streptomyces orinoci NRRL B-3379 [PHNC]
497757
497830
+
Arg
ACG
[ENA]
¡û
>C161003917
CP006567
Actinomycetota
Streptomyces rapamycinicus NRRL 5491 [CP006567]
6355125
6355198
+
Arg
ACG
-
¡û
>W1610053469
BBON01000051
Actinomycetota
Streptomyces sp. NBRC 109436 [BBON]
7320
7393
+
Arg
ACG
[ENA]
¡û
>W1610053558
BBOU01000054
Actinomycetota
Streptomyces hygroscopicus subsp. hygroscopicus [BBOU]
72542
72469
-
Arg
ACG
[ENA]
¡û
>W1610053669
BBOY01000124
Actinomycetota
Streptomyces hygroscopicus endus [BBOY]
6376
6449
+
Arg
ACG
[ENA]
¡û
>W1710017495
ASQP01000211
Actinomycetota
Streptomyces sparsogenes DSM 40356 [ASQP]
3040
3115
+
Arg
ACG
[ENA]
¡û
>W1710049847
BBON01000051
Actinomycetota
Streptomyces sp. NBRC 109436 [BBON]
7320
7393
+
Arg
ACG
[ENA]
¡û
>W1710049936
BBOU01000054
Actinomycetota
Streptomyces hygroscopicus subsp. hygroscopicus [BBOU]
72542
72469
-
Arg
ACG
[ENA]
¡û
>W1710050047
BBOY01000124
Actinomycetota
Streptomyces hygroscopicus endus [BBOY]
6376
6449
+
Arg
ACG
[ENA]
¡û
>W1710081017
BDFA01000010
Actinomycetota
Streptomyces sp. SPMA113 [BDFA]
291485
291412
-
Arg
ACG
[ENA]
¡û
>W1710535764
FNST01000002
Actinomycetota
Streptomyces melanosporofaciens [FNST]
3185094
3185021
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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