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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.307931 (52 seq.)
>W1710859981
LMCN01000003
Betaproteobacteria
Rhizobacter sp. Root29 (LMCN)
184760
184835
+
Glu
TTC
[ENA]
¡û
>W1710861282
LMDM01000015
Betaproteobacteria
Rhizobacter sp. Root1238 (LMDM)
51207
51132
-
Glu
TTC
[ENA]
¡û
>W1710893634
LNEY01000029
Betaproteobacteria
Burkholderiales bacterium Ga0077547 (LNEY)
64849
64924
+
Glu
TTC
[ENA]
¡û
>W1711221671
LXRH01000211
Betaproteobacteria
Candidatus Glomeribacter gigasporarum (LXRH)
286
361
+
Glu
TTC
[ENA]
¡û
>W1711221704
LXRI01000001
Betaproteobacteria
Candidatus Glomeribacter gigasporarum (LXRI)
18945
19020
+
Glu
TTC
[ENA]
¡û
>W131237192
AUNN01000080
Betaproteobacteria
Pelomonas sp. JGI 001013-K11 [AUNN]
21713
21788
+
Glu
TTC
[ENA]
¡û
>W131237195
AUNN01000080
Betaproteobacteria
Pelomonas sp. JGI 001013-K11 [AUNN]
22141
22216
+
Glu
TTC
[ENA]
¡û
>WENV180015522
FQKF010790328
[FQKF] soil metagenome; Soil
76
1
-
Glu
TTC
[ENA]
¢þ
>WENV180284703
OBID01093224
[OBID] metagenome; sludge
598
523
-
Glu
TTC
[ENA]
¢þ
>WENV180693976
OCZS011822789
[OCZS] soil metagenome; soil
161
86
-
Glu
TTC
[ENA]
¢þ
>WENV181173406
OEIV011448758
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
3
78
+
Glu
TTC
[ENA]
¢þ
>W141207226
AZND01000187
Betaproteobacteria
Methylibium sp. T29 [AZND]
5936
6011
+
Glu
TTC
[ENA]
¡û
>WENV183696799
OUME01000012
[OUME] metagenome; soil
13457
13382
-
Glu
TTC
[ENA]
¢þ
>WENV170552831
CXWK01002523
[CXWK] wastewater metagenome; activated sludge
314
239
-
Glu
TTC
[ENA]
¢þ
>WENV170577379
FRDC01005031
[FRDC] freshwater metagenome; water
249
324
+
Glu
TTC
[ENA]
¢þ
>WENV170707184
LNAP01014542
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
659
584
-
Glu
TTC
[ENA]
¢þ
>C181176209
CP029210
Betaproteobacteria
Aquabacterium olei NBRC 110486 (CP029210)
2709178
2709103
-
Glu
TTC
-
¡û
>C181176212
CP029210
Betaproteobacteria
Aquabacterium olei NBRC 110486 (CP029210)
2708720
2708645
-
Glu
TTC
-
¡û
>C191064738
CP029606
Betaproteobacteria
Methylibium sp. Pch-M (CP029606)
3545475
3545550
+
Glu
TTC
-
¡û
>W1910699942
MESA01000037
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_63_20 (MESA)
15693
15768
+
Glu
TTC
[ENA]
¡û
>W1910700047
MESD01000078
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_69_20 (MESD)
15204
15279
+
Glu
TTC
[ENA]
¡û
>W1910700332
MESK01000056
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_99 (MESK)
54407
54332
-
Glu
TTC
[ENA]
¡û
>W1910700335
MESK01000056
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_99 (MESK)
53951
53876
-
Glu
TTC
[ENA]
¡û
>W1910700338
MESK01000056
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_99 (MESK)
53481
53406
-
Glu
TTC
[ENA]
¡û
>W1911647481
QAJN01000010
Betaproteobacteria
Paucibacter sp. KBW04 (QAJN)
390782
390707
-
Glu
TTC
[ENA]
¡û
>W1911647483
QAJN01000010
Betaproteobacteria
Paucibacter sp. KBW04 (QAJN)
390235
390160
-
Glu
TTC
[ENA]
¡û
>W1911740721
QUSW01000001
Betaproteobacteria
Rhizobacter sp. S-16 (QUSW)
197514
197439
-
Glu
TTC
[ENA]
¡û
>W1810081372
PEOG01000055
Betaproteobacteria
Mitsuaria sp. HWN-4 (PEOG)
5632
5707
+
Glu
TTC
[ENA]
¡û
>W1810081375
PEOG01000055
Betaproteobacteria
Mitsuaria sp. HWN-4 (PEOG)
6148
6223
+
Glu
TTC
[ENA]
¡û
>SRA1002976
SRR002326.131361
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
169
244
+
Glu
TTC
[SRA]
>W1810196584
PNEO01000010
Betaproteobacteria
Burkholderia sp. WAC0059 (PNEO)
69126
69051
-
Glu
TTC
[ENA]
¡û
>W1810222857
POSP01000003
Betaproteobacteria
Paucibacter sp. CR182 (POSP)
388761
388686
-
Glu
TTC
[ENA]
¡û
>W1810222860
POSP01000003
Betaproteobacteria
Paucibacter sp. CR182 (POSP)
388232
388157
-
Glu
TTC
[ENA]
¡û
>SRA1003681
SRR002327.118747
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
94
19
-
Glu
TTC
[SRA]
>SRA1003766
SRR002327.170224
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
110
35
-
Glu
TTC
[SRA]
>SRA1003822
SRR002327.210811
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
117
42
-
Glu
TTC
[SRA]
>SRA1003959
SRR002328.58849
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
154
229
+
Glu
TTC
[SRA]
>SRA1004042
SRR002328.112103
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
202
274
+
Glu
TTC
[SRA]
>W1511433185
JUHA01000004
Betaproteobacteria
Methylibium sp. YR605 [JUHA]
165092
165167
+
Glu
TTC
[ENA]
¡û
>W11187567
CAFB01000038
Betaproteobacteria
Candidatus Glomeribacter gigasporarum BEG34 [CAFB]
34994
35069
+
Glu
TTC
[ENA]
¡û
>W11187636
CAFE01000261
Betaproteobacteria
Candidatus Burkholderia kirkii UZHbot1 [CAFE]
18494
18569
+
Glu
TTC
[ENA]
¡û
>C161059574
CP013692
Betaproteobacteria
Paucibacter sp. KCTC 42545
2042568
2042493
-
Glu
TTC
[Ensembl]
¡û
>C161059577
CP013692
Betaproteobacteria
Paucibacter sp. KCTC 42545
2042018
2041943
-
Glu
TTC
[Ensembl]
¡û
>C131007218
CP003803
Betaproteobacteria
Candidatus Kinetoplastibacterium desouzaii TCC079E
122043
121968
-
Glu
TTC
[Ensembl]
¡û
>W1610722327
LMCN01000003
Betaproteobacteria
Rhizobacter sp. Root29 (LMCN)
184760
184835
+
Glu
TTC
[ENA]
¡û
>W1610723628
LMDM01000015
Betaproteobacteria
Rhizobacter sp. Root1238 (LMDM)
51207
51132
-
Glu
TTC
[ENA]
¡û
>W1610753900
LNEY01000029
Betaproteobacteria
Burkholderiales bacterium Ga0077547 (LNEY)
64849
64924
+
Glu
TTC
[ENA]
¡û
>W1611006140
LXRH01000211
Betaproteobacteria
Candidatus Glomeribacter gigasporarum (LXRH)
286
361
+
Glu
TTC
[ENA]
¡û
>W1611006173
LXRI01000001
Betaproteobacteria
Candidatus Glomeribacter gigasporarum (LXRI)
18945
19020
+
Glu
TTC
[ENA]
¡û
>W1710575432
FOZE01000001
Betaproteobacteria
Mitsuaria sp. PDC51 (FOZE)
1897783
1897858
+
Glu
TTC
[ENA]
¡û
>W1710575435
FOZE01000001
Betaproteobacteria
Mitsuaria sp. PDC51 (FOZE)
1898299
1898374
+
Glu
TTC
[ENA]
¡û
>W1710592663
FRCQ01000010
Betaproteobacteria
Rhizobacter sp. OV335 (FRCQ)
64382
64457
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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