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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.308322 (51 seq.)
>W1711383830
MECU01000090
Gammaproteobacteria
Shigella sp. FC130 [MECU]
124164
124239
+
Lys
TTT
[ENA]
¡û
>W1711430307
MIIZ01000596
Gammaproteobacteria
Shigella sp. FC1967 [MIIZ]
142
67
-
Lys
TTT
[ENA]
¡û
>W1711430313
MIIZ01000625
Gammaproteobacteria
Shigella sp. FC1967 [MIIZ]
46
121
+
Lys
TTT
[ENA]
¡û
>W1711430354
MIIZ01001464
Gammaproteobacteria
Shigella sp. FC1967 [MIIZ]
11726
11801
+
Lys
TTT
[ENA]
¡û
>W1712020030
NEYX01000026
Gammaproteobacteria
Proteus mirabilis [NEYX]
337436
337361
-
Lys
TTT
[ENA]
¡û
>WENV180209670
OBAL01011661
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
894
969
+
Lys
TTT
[ENA]
¢þ
>WENV180368904
OBOG01006370
[OBOG] marine metagenome; seawater
423
498
+
Lys
TTT
[ENA]
¢þ
>WENV180370187
OBOH01040957
[OBOH] marine metagenome; ENVO:00002010
498
573
+
Lys
TTT
[ENA]
¢þ
>WENV180637085
OCRG01000059
[OCRG] marine metagenome; seawater
13202
13277
+
Lys
TTT
[ENA]
¢þ
>WENV170621714
FUWD013070420
[FUWD] metagenome; unknown
283
208
-
Lys
TTT
[ENA]
¢þ
>WENV170629901
FUWD013286113
[FUWD] metagenome; unknown
283
208
-
Lys
TTT
[ENA]
¢þ
>C191110544
CP033736
Gammaproteobacteria
Proteus vulgaris FDAARGOS_556 [CP033736]
711828
711903
+
Lys
TTT
-
¡û
>C191110545
CP033736
Gammaproteobacteria
Proteus vulgaris FDAARGOS_556 [CP033736]
711935
712010
+
Lys
TTT
-
¡û
>C191110595
CP033736
Gammaproteobacteria
Proteus vulgaris FDAARGOS_556 [CP033736]
2302277
2302202
-
Lys
TTT
-
¡û
>C191110596
CP033736
Gammaproteobacteria
Proteus vulgaris FDAARGOS_556 [CP033736]
2302163
2302088
-
Lys
TTT
-
¡û
>C191110597
CP033736
Gammaproteobacteria
Proteus vulgaris FDAARGOS_556 [CP033736]
2302047
2301972
-
Lys
TTT
-
¡û
>W141804887
JPIX01000001
Gammaproteobacteria
Proteus vulgaris [JPIX]
130467
130542
+
Lys
TTT
[ENA]
¡û
>W141804888
JPIX01000001
Gammaproteobacteria
Proteus vulgaris [JPIX]
130581
130656
+
Lys
TTT
[ENA]
¡û
>W141804889
JPIX01000001
Gammaproteobacteria
Proteus vulgaris [JPIX]
130697
130772
+
Lys
TTT
[ENA]
¡û
>W141804911
JPIX01000001
Gammaproteobacteria
Proteus vulgaris [JPIX]
1583210
1583135
-
Lys
TTT
[ENA]
¡û
>W141804912
JPIX01000001
Gammaproteobacteria
Proteus vulgaris [JPIX]
1583103
1583028
-
Lys
TTT
[ENA]
¡û
>W1911580978
PENU01000001
Gammaproteobacteria
Proteus terrae 5 str. ATCC 51470 [PENU]
390197
390272
+
Lys
TTT
[ENA]
¡û
>W1911580979
PENU01000001
Gammaproteobacteria
Proteus terrae 5 str. ATCC 51470 [PENU]
390311
390386
+
Lys
TTT
[ENA]
¡û
>W1911580980
PENU01000001
Gammaproteobacteria
Proteus terrae 5 str. ATCC 51470 [PENU]
390427
390502
+
Lys
TTT
[ENA]
¡û
>W1911580986
PENU01000003
Gammaproteobacteria
Proteus terrae 5 str. ATCC 51470 [PENU]
121412
121487
+
Lys
TTT
[ENA]
¡û
>W1911580987
PENU01000003
Gammaproteobacteria
Proteus terrae 5 str. ATCC 51470 [PENU]
121519
121594
+
Lys
TTT
[ENA]
¡û
>W1810080891
PENS01000006
Gammaproteobacteria
Proteus terrae LMG 28659 [PENS]
205555
205480
-
Lys
TTT
[ENA]
¡û
>W1810080892
PENS01000006
Gammaproteobacteria
Proteus terrae LMG 28659 [PENS]
205441
205366
-
Lys
TTT
[ENA]
¡û
>W1810080893
PENS01000006
Gammaproteobacteria
Proteus terrae LMG 28659 [PENS]
205325
205250
-
Lys
TTT
[ENA]
¡û
>W1810080917
PENS01000010
Gammaproteobacteria
Proteus terrae LMG 28659 [PENS]
121377
121452
+
Lys
TTT
[ENA]
¡û
>W1810080918
PENS01000010
Gammaproteobacteria
Proteus terrae LMG 28659 [PENS]
121484
121559
+
Lys
TTT
[ENA]
¡û
>W1810081040
PENX01000001
Gammaproteobacteria
Proteus sp. CA142267 [PENX]
806334
806259
-
Lys
TTT
[ENA]
¡û
>W1810081041
PENX01000001
Gammaproteobacteria
Proteus sp. CA142267 [PENX]
806220
806145
-
Lys
TTT
[ENA]
¡û
>W1810081042
PENX01000001
Gammaproteobacteria
Proteus sp. CA142267 [PENX]
806104
806029
-
Lys
TTT
[ENA]
¡û
>W1810081054
PENX01000002
Gammaproteobacteria
Proteus sp. CA142267 [PENX]
120720
120795
+
Lys
TTT
[ENA]
¡û
>W1810081055
PENX01000002
Gammaproteobacteria
Proteus sp. CA142267 [PENX]
120827
120902
+
Lys
TTT
[ENA]
¡û
>W1810107872
PHFJ01000001
Gammaproteobacteria
Proteus penneri ATCC 33519 [PHFJ]
118
193
+
Lys
TTT
[ENA]
¡û
>W1810107873
PHFJ01000001
Gammaproteobacteria
Proteus penneri ATCC 33519 [PHFJ]
232
307
+
Lys
TTT
[ENA]
¡û
>W1810107874
PHFJ01000001
Gammaproteobacteria
Proteus penneri ATCC 33519 [PHFJ]
349
424
+
Lys
TTT
[ENA]
¡û
>W1810107893
PHFJ01000002
Gammaproteobacteria
Proteus penneri ATCC 33519 [PHFJ]
118905
118980
+
Lys
TTT
[ENA]
¡û
>W1810107894
PHFJ01000002
Gammaproteobacteria
Proteus penneri ATCC 33519 [PHFJ]
119012
119087
+
Lys
TTT
[ENA]
¡û
>W1810762150
QPMG01000001
Gammaproteobacteria
Proteus sp. CA142267 [QPMG]
806334
806259
-
Lys
TTT
[ENA]
¡û
>W1810762151
QPMG01000001
Gammaproteobacteria
Proteus sp. CA142267 [QPMG]
806220
806145
-
Lys
TTT
[ENA]
¡û
>W1810762152
QPMG01000001
Gammaproteobacteria
Proteus sp. CA142267 [QPMG]
806104
806029
-
Lys
TTT
[ENA]
¡û
>W1810762164
QPMG01000002
Gammaproteobacteria
Proteus sp. CA142267 [QPMG]
120720
120795
+
Lys
TTT
[ENA]
¡û
>W1810762165
QPMG01000002
Gammaproteobacteria
Proteus sp. CA142267 [QPMG]
120827
120902
+
Lys
TTT
[ENA]
¡û
>W1610994241
LXEN01000031
Gammaproteobacteria
Proteus myxofaciens ATCC 19692 [LXEN]
6477
6402
-
Lys
TTT
[ENA]
¡û
>W1610994242
LXEN01000031
Gammaproteobacteria
Proteus myxofaciens ATCC 19692 [LXEN]
6338
6263
-
Lys
TTT
[ENA]
¡û
>W1610994243
LXEN01000031
Gammaproteobacteria
Proteus myxofaciens ATCC 19692 [LXEN]
6225
6150
-
Lys
TTT
[ENA]
¡û
>W1610994283
LXEN01000128
Gammaproteobacteria
Proteus myxofaciens ATCC 19692 [LXEN]
12286
12361
+
Lys
TTT
[ENA]
¡û
>W1610994284
LXEN01000128
Gammaproteobacteria
Proteus myxofaciens ATCC 19692 [LXEN]
12438
12513
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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