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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.308361 (34 seq.)
>W1711055116
LRUI01000009
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
121407
121332
-
Gly
GCC
[ENA]
¡û
>W1711624684
MPHL01000013
Gammaproteobacteria
Colwellia sp. UCD-KL20 [MPHL]
20358
20433
+
Gly
GCC
[ENA]
¡û
>W1711624687
MPHL01000013
Gammaproteobacteria
Colwellia sp. UCD-KL20 [MPHL]
20724
20799
+
Gly
GCC
[ENA]
¡û
>W1711624688
MPHL01000013
Gammaproteobacteria
Colwellia sp. UCD-KL20 [MPHL]
20839
20914
+
Gly
GCC
[ENA]
¡û
>W1711767401
MUZU01000011
Gammaproteobacteria
Pseudocolwellia agarivorans QM50 [MUZU]
21822
21747
-
Gly
GCC
[ENA]
¡û
>W1711767404
MUZU01000011
Gammaproteobacteria
Pseudocolwellia agarivorans QM50 [MUZU]
21456
21381
-
Gly
GCC
[ENA]
¡û
>W1711767405
MUZU01000011
Gammaproteobacteria
Pseudocolwellia agarivorans QM50 [MUZU]
21341
21266
-
Gly
GCC
[ENA]
¡û
>C171066085
CP017689
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [CP017689]
1894279
1894354
+
Gly
GCC
-
¡û
>WENV180210038
OBAL01074703
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
407
332
-
Gly
GCC
[ENA]
¢þ
>WENV180398824
OBQB01001491
[OBQB] marine metagenome; ENVO.00002150
175
250
+
Gly
GCC
[ENA]
¢þ
>C191130493
CP034759
Gammaproteobacteria
Litorilituus sediminis JCM 17549 [CP034759]
1023126
1023051
-
Gly
GCC
-
¡û
>C191130496
CP034759
Gammaproteobacteria
Litorilituus sediminis JCM 17549 [CP034759]
1022715
1022640
-
Gly
GCC
-
¡û
>C191130499
CP034759
Gammaproteobacteria
Litorilituus sediminis JCM 17549 [CP034759]
1022322
1022247
-
Gly
GCC
-
¡û
>C191160599
CP038493
Gammaproteobacteria
Thalassotalea sp. HSM 43 [CP038493]
2177
2102
-
Gly
GCC
-
¡û
>C191160602
CP038493
Gammaproteobacteria
Thalassotalea sp. HSM 43 [CP038493]
1859
1784
-
Gly
GCC
-
¡û
>C191160603
CP038493
Gammaproteobacteria
Thalassotalea sp. HSM 43 [CP038493]
1755
1680
-
Gly
GCC
-
¡û
>C191160605
CP038493
Gammaproteobacteria
Thalassotalea sp. HSM 43 [CP038493]
1467
1392
-
Gly
GCC
-
¡û
>C191160606
CP038493
Gammaproteobacteria
Thalassotalea sp. HSM 43 [CP038493]
1374
1299
-
Gly
GCC
-
¡û
>W1511533783
JYNI01000072
Gammaproteobacteria
Thalassomonas actiniarum A5K-106 [JYNI]
60
135
+
Gly
GCC
[ENA]
¡û
>W1511533785
JYNI01000072
Gammaproteobacteria
Thalassomonas actiniarum A5K-106 [JYNI]
438
513
+
Gly
GCC
[ENA]
¡û
>W1511533787
JYNI01000072
Gammaproteobacteria
Thalassomonas actiniarum A5K-106 [JYNI]
700
775
+
Gly
GCC
[ENA]
¡û
>W1511533789
JYNI01000072
Gammaproteobacteria
Thalassomonas actiniarum A5K-106 [JYNI]
968
1043
+
Gly
GCC
[ENA]
¡û
>W1511533791
JYNI01000072
Gammaproteobacteria
Thalassomonas actiniarum A5K-106 [JYNI]
1210
1285
+
Gly
GCC
[ENA]
¡û
>W1511533793
JYNI01000072
Gammaproteobacteria
Thalassomonas actiniarum A5K-106 [JYNI]
1482
1557
+
Gly
GCC
[ENA]
¡û
>W1511533831
JYNJ01000127
Gammaproteobacteria
Thalassomonas viridans XOM25 [JYNJ]
155
230
+
Gly
GCC
[ENA]
¡û
>W1511533833
JYNJ01000127
Gammaproteobacteria
Thalassomonas viridans XOM25 [JYNJ]
370
445
+
Gly
GCC
[ENA]
¡û
>W1511533860
JYNJ01000239
Gammaproteobacteria
Thalassomonas viridans XOM25 [JYNJ]
5235
5310
+
Gly
GCC
[ENA]
¡û
>W1511533863
JYNJ01000239
Gammaproteobacteria
Thalassomonas viridans XOM25 [JYNJ]
5595
5670
+
Gly
GCC
[ENA]
¡û
>W1511533864
JYNJ01000239
Gammaproteobacteria
Thalassomonas viridans XOM25 [JYNJ]
5713
5788
+
Gly
GCC
[ENA]
¡û
>W1511533865
JYNJ01000239
Gammaproteobacteria
Thalassomonas viridans XOM25 [JYNJ]
5950
6025
+
Gly
GCC
[ENA]
¡û
>W1511533867
JYNJ01000239
Gammaproteobacteria
Thalassomonas viridans XOM25 [JYNJ]
6227
6302
+
Gly
GCC
[ENA]
¡û
>W1610896162
LRUI01000009
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
121407
121332
-
Gly
GCC
[ENA]
¡û
>W1710545243
FOBI01000005
Gammaproteobacteria
Colwellia chukchiensis [FOBI]
102359
102434
+
Gly
GCC
[ENA]
¡û
>W1710545249
FOBI01000005
Gammaproteobacteria
Colwellia chukchiensis [FOBI]
103123
103198
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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