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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.308662 (36 seq.)
>W1710864251
LMFS01000003
Alphaproteobacteria
Pseudolabrys sp. Root1462 [LMFS]
795669
795744
+
Phe
GAA
[ENA]
¡û
>W1710892412
LNDS01000027
Alphaproteobacteria
Rhizobiales bacterium Ga0077525 [LNDS]
106824
106899
+
Phe
GAA
[ENA]
¡û
>W1710892788
LNEC01000022
Alphaproteobacteria
Bradyrhizobiaceae bacterium Ga0074131 [LNEC]
233833
233908
+
Phe
GAA
[ENA]
¡û
>W1711127841
LURA01000024
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
36133
36208
+
Phe
GAA
[ENA]
¡û
>W1711127872
LURB01000006
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
704
779
+
Phe
GAA
[ENA]
¡û
>W1711127924
LURC01000410
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S24_B7 [LURC]
2715
2640
-
Phe
GAA
[ENA]
¡û
>W1711350395
MCRJ01000084
Alphaproteobacteria
Methylobrevis pamukkalensis [MCRJ]
4863
4788
-
Phe
GAA
[ENA]
¡û
>W1711506014
MKWA01000013
Alphaproteobacteria
Rhizobiales bacterium 64-17 [MKWA]
70548
70473
-
Phe
GAA
[ENA]
¡û
>WENV180020547
FTCZ01005934
[FTCZ] metagenome; soil
5648
5573
-
Phe
GAA
[ENA]
¢þ
>WENV180292352
OBIV01405676
[OBIV] soil metagenome; Clay
54
129
+
Phe
GAA
[ENA]
¢þ
>WENV181307928
OFIS01000041
[OFIS] sludge metagenome; sludge
7111
7186
+
Phe
GAA
[ENA]
¢þ
>WENV181311916
OFJB01022343
[OFJB] sludge metagenome; sludge
329
404
+
Phe
GAA
[ENA]
¢þ
>WENV181312080
OFJB01039738
[OFJB] sludge metagenome; sludge
546
471
-
Phe
GAA
[ENA]
¢þ
>WENV181402039
OFTY01000051
[OFTY] sludge metagenome; sludge
107918
107843
-
Phe
GAA
[ENA]
¢þ
>WENV170004190
AGTN01595332
[AGTN] bioreactor metagenome; poplar biomass
59
134
+
Phe
GAA
[ENA]
¢þ
>WENV170735857
LULL01017757
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
434
509
+
Phe
GAA
[ENA]
¢þ
>WENV170759586
LUMT01000020
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
75020
75095
+
Phe
GAA
[ENA]
¢þ
>C181001042
AP014946
Alphaproteobacteria
Variibacter gotjawalensis GJW-30 [AP014946]
461741
461816
+
Phe
GAA
-
¡û
>C181133054
CP026381
Alphaproteobacteria
Sphingopyxis sp. MG [CP026381]
1158253
1158328
+
Phe
GAA
-
¡û
>C191000366
AP017603
Alphaproteobacteria
Sphingopyxis sp. EG6 [AP017603]
2300234
2300159
-
Phe
GAA
-
¡û
>C191170856
CP039690
Alphaproteobacteria
Phreatobacter stygius KCTC 52518 [CP039690]
3705472
3705547
+
Phe
GAA
-
¡û
>W1910501790
FYAT01000018
Alphaproteobacteria
Sphingopyxis sp. P1IMeth2 [FYAT]
39111
39186
+
Phe
GAA
[ENA]
¡û
>W1910549112
FZPA01000002
Alphaproteobacteria
Sphingopyxis indica DS15 [FZPA]
123963
123888
-
Phe
GAA
[ENA]
¡û
>W1810658665
QJJM01000002
Alphaproteobacteria
Blastomonas natatoria DSM 3183 [QJJM]
118212
118287
+
Phe
GAA
[ENA]
¡û
>W1810789363
QRGO01000001
Alphaproteobacteria
Undibacter mobilis GY_H [QRGO]
596127
596052
-
Phe
GAA
[ENA]
¡û
>C151051491
CP009452
Alphaproteobacteria
Sphingopyxis sp. 113P3 [CP009452]
1293994
1294069
+
Phe
GAA
-
¡û
>C151086221
CP011770
Alphaproteobacteria
Croceicoccus naphthovorans PQ-2 [CP011770]
633857
633782
-
Phe
GAA
[Ensembl]
¡û
>C161055604
CP013342
Alphaproteobacteria
Sphingopyxis terrae subsp. terrae NBRC 15098 203-1 [CP013342]
2507879
2507954
+
Phe
GAA
[Ensembl]
¡û
>W1610071358
BCUA01000008
Alphaproteobacteria
Sphingopyxis granuli NBRC 100800 [BCUA]
75272
75197
-
Phe
GAA
[ENA]
¡û
>W1610726597
LMFS01000003
Alphaproteobacteria
Pseudolabrys sp. Root1462 [LMFS]
795669
795744
+
Phe
GAA
[ENA]
¡û
>W1610752678
LNDS01000027
Alphaproteobacteria
Rhizobiales bacterium Ga0077525 [LNDS]
106824
106899
+
Phe
GAA
[ENA]
¡û
>W1610753054
LNEC01000022
Alphaproteobacteria
Bradyrhizobiaceae bacterium Ga0074131 [LNEC]
233833
233908
+
Phe
GAA
[ENA]
¡û
>W1610938955
LURA01000024
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
36133
36208
+
Phe
GAA
[ENA]
¡û
>W1610938986
LURB01000006
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
704
779
+
Phe
GAA
[ENA]
¡û
>W1610939038
LURC01000410
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S24_B7 [LURC]
2715
2640
-
Phe
GAA
[ENA]
¡û
>W1710068723
BCUA01000008
Alphaproteobacteria
Sphingopyxis granuli NBRC 100800 [BCUA]
75272
75197
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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