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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.310214 (38 seq.)
>A171003601
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
1543562
1543489
-
Asp
GTC
-
¡û
>A171004949
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
3864057
3864130
+
Asp
GTC
-
¡û
>A171004999
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
3838874
3838947
+
Asp
GTC
-
¡û
>A171005051
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
3921372
3921445
+
Asp
GTC
-
¡û
>A171005105
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
3927246
3927319
+
Asp
GTC
-
¡û
>A171005370
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
1136760
1136834
+
Asp
GTC
-
¡û
>A171005379
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
1958480
1958406
-
Asp
GTC
-
¡û
>At1539
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
1790231
1790159
-
Asp
GTC
[Ensembl]
¡û
>WENV170722589
LSQX01234693
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2997
3070
+
Asp
GTC
[ENA]
¢þ
>W1910229830
FOHQ01000001
Euryarchaeota
Methanococcoides vulcani SLH 33 [FOHQ]
264267
264341
+
Asp
GTC
[ENA]
¡û
>W1910230572
FOUJ01000002
Euryarchaeota
Methanolobus profundi Mob M [FOUJ]
353894
353821
-
Asp
GTC
[ENA]
¡û
>W1910569268
JJOR01000166
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
12329
12402
+
Asp
GTC
[ENA]
¡û
>W1910569738
JJPB01000014
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
38535
38608
+
Asp
GTC
[ENA]
¡û
>W1910569809
JJPC01000053
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
12376
12449
+
Asp
GTC
[ENA]
¡û
>W1910569853
JJPD01000098
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
20880
20953
+
Asp
GTC
[ENA]
¡û
>W1910570289
JJPL01000135
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
12350
12423
+
Asp
GTC
[ENA]
¡û
>W1910570309
JJPM01000090
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
39287
39360
+
Asp
GTC
[ENA]
¡û
>W1910570395
JJPN01000172
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
9925
9852
-
Asp
GTC
[ENA]
¡û
>W1910570413
JJPO01000042
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
10239
10166
-
Asp
GTC
[ENA]
¡û
>W1910570539
JJPQ01000146
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
38426
38499
+
Asp
GTC
[ENA]
¡û
>W1910570615
JJPS01000090
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
12330
12403
+
Asp
GTC
[ENA]
¡û
>W1910570683
JJPT01000130
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
24385
24458
+
Asp
GTC
[ENA]
¡û
>W1910570779
JJPV01000067
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
65825
65752
-
Asp
GTC
[ENA]
¡û
>W1910570819
JJPW01000034
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
12360
12433
+
Asp
GTC
[ENA]
¡û
>W1910570958
JJPZ01000020
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
9952
9879
-
Asp
GTC
[ENA]
¡û
>W1910571441
JJQI01000090
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
37576
37649
+
Asp
GTC
[ENA]
¡û
>W1910571465
JJQJ01000069
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
13441
13514
+
Asp
GTC
[ENA]
¡û
>W1910571539
JJQK01000214
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
9969
9896
-
Asp
GTC
[ENA]
¡û
>W1910571700
JJQN01000071
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
4474
4401
-
Asp
GTC
[ENA]
¡û
>W1910571871
JJQQ01000068
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
13431
13504
+
Asp
GTC
[ENA]
¡û
>W1910571903
JJQR01000004
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
12343
12416
+
Asp
GTC
[ENA]
¡û
>W1910571999
JJQS01000155
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
12349
12422
+
Asp
GTC
[ENA]
¡û
>W1910572015
JJQT01000068
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
12349
12422
+
Asp
GTC
[ENA]
¡û
>W1910572328
JJQZ01000117
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
12352
12425
+
Asp
GTC
[ENA]
¡û
>W1910572440
JJRB01000129
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
12391
12464
+
Asp
GTC
[ENA]
¡û
>W1910661847
MBKP01000006
Euryarchaeota
Methanolobus psychrotolerans YSF-03 [MBKP]
79245
79171
-
Asp
GTC
[ENA]
¡û
>W1911581829
PGGK01000011
Euryarchaeota
Methanolobus halotolerans SY-01 [PGGK]
59630
59704
+
Asp
GTC
[ENA]
¡û
>W1610670248
LKAZ01000036
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
84630
84704
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK