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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.310237 (45 seq.)
>W1711129198
LUTU01000014
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
29125
29200
+
Lys
CTT
[ENA]
¡û
>W1711188770
LWQT01000010
Alphaproteobacteria
Paramagnetospirillum marisnigri [LWQT]
5218
5143
-
Lys
CTT
[ENA]
¡û
>W1711385979
MEEV01000002
Alphaproteobacteria
Pelagibacterium sp. SCN 64-44 [MEEV]
199037
199112
+
Lys
CTT
[ENA]
¡û
>W1711386016
MEEV01000025
Alphaproteobacteria
Pelagibacterium sp. SCN 64-44 [MEEV]
168183
168258
+
Lys
CTT
[ENA]
¡û
>W131241394
BARL01000003
Alphaproteobacteria
Gluconobacter frateurii NBRC 103465 [BARL]
595348
595273
-
Lys
CTT
[ENA]
¡û
>C010072
CP000009
Alphaproteobacteria
Gluconobacter oxydans 621H [CP000009]
1162577
1162502
-
Lys
CTT
[Ensembl]
¡û
>WENV180261936
OBEQ011340838
[OBEQ] groundwater metagenome; groundwater
6
81
+
Lys
CTT
[ENA]
¢þ
>W141200357
AYXS01000019
Alphaproteobacteria
Asaia sp. SF2.1 [AYXS]
21179
21104
-
Lys
CTT
[ENA]
¡û
>W141226174
BAJV01000014
Alphaproteobacteria
Asaia prunellae JCM 25354 [BAJV]
59038
59113
+
Lys
CTT
[ENA]
¡û
>W141229570
BAND01000015
Alphaproteobacteria
Acidomonas methanolica NBRC 104435 [BAND]
3584
3509
-
Lys
CTT
[ENA]
¡û
>W141229933
BASM01000016
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3257 [BASM]
91714
91639
-
Lys
CTT
[ENA]
¡û
>W141247950
CBLX010000023
Alphaproteobacteria
Asaia bogorensis SF2.1 [CBLX]
147878
147953
+
Lys
CTT
[ENA]
¡û
>C181221220
LT900338
Alphaproteobacteria
Gluconobacter oxydans 621H [LT900338]
1162585
1162510
-
Lys
CTT
-
¡û
>C191157881
CP038143
Alphaproteobacteria
Oecophyllibacter saccharovorans Ha5 [CP038143]
925307
925232
-
Lys
CTT
-
¡û
>W1910183193
BJNM01000039
Alphaproteobacteria
Gluconobacter oxydans NBRC 14819 [BJNM]
4667
4592
-
Lys
CTT
[ENA]
¡û
>W1911139222
NOXS01000031
Alphaproteobacteria
Elstera cyanobacteriorum TH019 [NOXS]
87628
87703
+
Lys
CTT
[ENA]
¡û
>W1911597814
PNQZ01000001
Alphaproteobacteria
Asaia sp. W19 [PNQZ]
11492
11417
-
Lys
CTT
[ENA]
¡û
>W1810053998
PDEU01000006
Alphaproteobacteria
Acetobacter fabarum OG2 [PDEU]
82409
82484
+
Lys
CTT
[ENA]
¡û
>W1810426226
PYVZ01000019
Alphaproteobacteria
Devosia indica IO390501 [PYVZ]
12081
12006
-
Lys
CTT
[ENA]
¡û
>W1810489520
QBBV01000004
Alphaproteobacteria
Acuticoccus kandeliae J103 [QBBV]
376439
376364
-
Lys
CTT
[ENA]
¡û
>W1810576893
QENV01000002
Alphaproteobacteria
Devosia sp. PTEAB7WZ [QENV]
200772
200847
+
Lys
CTT
[ENA]
¡û
>W1511541953
JZEX01000143
Alphaproteobacteria
Devosia geojensis BD-c194 [JZEX]
2925
3000
+
Lys
CTT
[ENA]
¡û
>C161001096
AP014690
Alphaproteobacteria
Asaia bogorensis NBRC 16594 [AP014690]
3092059
3091984
-
Lys
CTT
[Ensembl]
¡û
>C161096039
CP016328
Alphaproteobacteria
Gluconobacter oxydans 1.637 [CP016328]
796044
795969
-
Lys
CTT
-
¡û
>C161105595
LN609302
Alphaproteobacteria
Acetobacter ghanensis LMG 23848T [LN609302]
404918
404843
-
Lys
CTT
[Ensembl]
¡û
>W121016338
AGQV01000006
Alphaproteobacteria
Gluconobacter morbifer G707 [AGQV]
60874
60799
-
Lys
CTT
[ENA]
¡û
>W1610041171
BANG01000007
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
84117
84192
+
Lys
CTT
[ENA]
¡û
>W1610624144
LHZD01000020
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
218920
218845
-
Lys
CTT
[ENA]
¡û
>W1610624154
LHZE01000033
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
1592
1667
+
Lys
CTT
[ENA]
¡û
>W1610624252
LHZG01000130
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
4338
4263
-
Lys
CTT
[ENA]
¡û
>W1610624478
LHZL01000113
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
4845
4770
-
Lys
CTT
[ENA]
¡û
>W1610624755
LHZR01000099
Alphaproteobacteria
Gluconobacter albidus [LHZR]
28471
28546
+
Lys
CTT
[ENA]
¡û
>W1610940271
LUTU01000014
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
29125
29200
+
Lys
CTT
[ENA]
¡û
>W1610990889
LWQT01000010
Alphaproteobacteria
Paramagnetospirillum marisnigri [LWQT]
5218
5143
-
Lys
CTT
[ENA]
¡û
>W1710038369
BANG01000007
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
84117
84192
+
Lys
CTT
[ENA]
¡û
>W1710582164
FPKU01000001
Alphaproteobacteria
Devosia enhydra [FPKU]
1273358
1273283
-
Lys
CTT
[ENA]
¡û
>W1710598520
FTOA01000006
Alphaproteobacteria
Insolitispirillum peregrinum [FTOA]
13816
13741
-
Lys
CTT
[ENA]
¡û
>W1710598523
FTOA01000007
Alphaproteobacteria
Insolitispirillum peregrinum [FTOA]
54313
54238
-
Lys
CTT
[ENA]
¡û
>W1710624704
JOPF01000001
Alphaproteobacteria
Gluconobacter sp. DsW_056 [JOPF]
95101
95176
+
Lys
CTT
[ENA]
¡û
>W1710624898
JOPJ01000050
Alphaproteobacteria
Acetobacter okinawensis [JOPJ]
96194
96269
+
Lys
CTT
[ENA]
¡û
>W1710755262
LHZD01000020
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
218920
218845
-
Lys
CTT
[ENA]
¡û
>W1710755272
LHZE01000033
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
1592
1667
+
Lys
CTT
[ENA]
¡û
>W1710755370
LHZG01000130
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
4338
4263
-
Lys
CTT
[ENA]
¡û
>W1710755596
LHZL01000113
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
4845
4770
-
Lys
CTT
[ENA]
¡û
>W1710755873
LHZR01000099
Alphaproteobacteria
Gluconobacter albidus [LHZR]
28471
28546
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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