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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.311033 (37 seq.)
>W1711411425
MGTC01000007
Unclassified
Deltaproteobacteria bacterium RIFOXYD12_FULL_55_16 [MGTC]
8836
8911
+
Val
TAC
[ENA]
¡û
>W1711411474
MGTD01000024
Unclassified
Deltaproteobacteria bacterium RIFOXYD12_FULL_56_24 [MGTD]
37518
37443
-
Val
TAC
[ENA]
¡û
>W1711420781
MHXM01000015
Thermodesulfobacteriota
Desulfuromonadaceae bacterium GWC2_58_13 [MHXM]
22565
22490
-
Val
TAC
[ENA]
¡û
>W1711584377
MNYK01000049
Thermodesulfobacteriota
Desulfobacterales bacterium CG2_30_60_27 [MNYK]
2697
2772
+
Val
TAC
[ENA]
¡û
>WENV180271474
OBEQ012279045
[OBEQ] groundwater metagenome; groundwater
2912
2987
+
Val
TAC
[ENA]
¢þ
>WENV180316868
OBKJ01000460
[OBKJ] metagenome; hydrothermal vent
666
591
-
Val
TAC
[ENA]
¢þ
>WENV180352226
OBLQ010200391
[OBLQ] soil metagenome; soil
46
121
+
Val
TAC
[ENA]
¢þ
>WENV180581728
OCMK01055499
[OCMK] metagenome; diffuse fluid
47
122
+
Val
TAC
[ENA]
¢þ
>WENV181207099
OFAY01000550
[OFAY] metagenome; hydrothermal vent
285
210
-
Val
TAC
[ENA]
¢þ
>WENV181208655
OFBC01001058
[OFBC] metagenome; hydrothermal vent
1167
1092
-
Val
TAC
[ENA]
¢þ
>WENV181224211
OFDE01000989
[OFDE] metagenome; hydrothermal vent
1515
1590
+
Val
TAC
[ENA]
¢þ
>WENV181224692
OFDG01001358
[OFDG] metagenome; hydrothermal vent
704
629
-
Val
TAC
[ENA]
¢þ
>WENV181225422
OFDI01001225
[OFDI] metagenome; hydrothermal vent
1062
987
-
Val
TAC
[ENA]
¢þ
>W141277853
JAEX01000002
Thermodesulfobacteriota
Desulfocurvus vexinensis DSM 17965 [JAEX]
110965
111040
+
Val
TAC
[ENA]
¡û
>WENV183678827
ORJL011928590
[ORJL] groundwater metagenome; groundwater
230
305
+
Val
TAC
[ENA]
¢þ
>WENV183718763
PDWJ01006422
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1797
1872
+
Val
TAC
[ENA]
¢þ
>WENV183721600
PDWJ01076947
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
228
153
-
Val
TAC
[ENA]
¢þ
>WENV170007479
AMWB02130138
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
2399
2324
-
Val
TAC
[ENA]
¢þ
>WENV170007801
AMWB02158523
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
55503
55578
+
Val
TAC
[ENA]
¢þ
>WENV170640549
JFJP01022045
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
8490
8565
+
Val
TAC
[ENA]
¢þ
>WENV170642164
JFJP01039360
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3815
3740
-
Val
TAC
[ENA]
¢þ
>WENV170642687
JFJP01043419
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
2507
2582
+
Val
TAC
[ENA]
¢þ
>WENV170657564
JTFP01001759
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
6765
6840
+
Val
TAC
[ENA]
¢þ
>WENV170718330
LSQX01071310
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2717
2792
+
Val
TAC
[ENA]
¢þ
>W09108766
ABTO01000019
Thermodesulfobacteriota
Desulfohalobium retbaense DSM 5692 [ABTO]
47283
47208
-
Val
TAC
[ENA]
¡û
>W141701593
JMKT01000012
Thermodesulfobacteriota
Desulfonatronovibrio hydrogenovorans DSM 9292 [JMKT]
175333
175258
-
Val
TAC
[ENA]
¡û
>W141804592
JPIK01000012
Thermodesulfobacteriota
Desulfonatronum thiodismutans [JPIK]
246714
246639
-
Val
TAC
[ENA]
¡û
>W1910067296
BEXT01000001
Thermodesulfobacteriota
Desulfonema ishimotonii Tokyo 01 [BEXT]
5805166
5805241
+
Val
TAC
[ENA]
¡û
>SRA1033260
SRR035088.209728
454 Sequencing (SRP001809)
210
285
+
Val
TAC
[SRA]
>SRA1038533
SRR035090.322459
454 Sequencing (SRP001811)
110
185
+
Val
TAC
[SRA]
>C10105395
CP001734
Thermodesulfobacteriota
Desulfohalobium retbaense DSM 5692 [CP001734]
2132544
2132619
+
Val
TAC
[Ensembl]
¡û
>C11107202
CP002364
Thermodesulfobacteriota
Desulfobulbus propionicus DSM 2032 [CP002364]
1600380
1600305
-
Val
TAC
[Ensembl]
¡û
>C161069063
CP014230
Thermodesulfobacteriota
Desulfomicrobium orale DSM 12838 [CP014230]
357276
357201
-
Val
TAC
[Ensembl]
¡û
>C161082942
CP015080
Thermodesulfobacteriota
Desulfuromonas sp. DDH964 [CP015080]
2594526
2594451
-
Val
TAC
[Ensembl]
¡û
>C131010882
CP003985
Thermodesulfobacteriota
Desulfocapsa sulfexigens DSM 10523 [CP003985]
3090200
3090275
+
Val
TAC
[Ensembl]
¡û
>WENV078110
AAFY01022051
Fossil microbial community from Whale Fall (Santa Cruz Basin)
689
614
-
Val
TAC
[ENA]
>W1710587105
FQXS01000038
Thermodesulfobacteriota
Desulfofustis glycolicus DSM 9705 [FQXS]
35616
35691
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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