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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.31122 (86 seq.)
>W1710915709
LNUL01000106
Bacillota
Loigolactobacillus coryniformis subsp. coryniformis [LNUL]
988
1075
+
Ser
CGA
[ENA]
¡û
>W1711068969
LSFF01000005
Bacillota
Latilactobacillus sakei [LSFF]
721
634
-
Ser
CGA
[ENA]
¡û
>W1711484734
MKDC01000027
Bacillota
Latilactobacillus sakei [MKDC]
140900
140813
-
Ser
CGA
[ENA]
¡û
>W1711484764
MKDD01000001
Bacillota
Latilactobacillus sakei [MKDD]
213417
213504
+
Ser
CGA
[ENA]
¡û
>W1711484815
MKDE01000001
Bacillota
Latilactobacillus sakei [MKDE]
267113
267200
+
Ser
CGA
[ENA]
¡û
>W1711484921
MKDG01000004
Bacillota
Latilactobacillus curvatus [MKDG]
59193
59280
+
Ser
CGA
[ENA]
¡û
>W1711485030
MKDI01000043
Bacillota
Latilactobacillus sakei [MKDI]
42082
41992
-
Ser
CGA
[ENA]
¡û
>W1711485040
MKDJ01000007
Bacillota
Latilactobacillus sakei [MKDJ]
165125
165038
-
Ser
CGA
[ENA]
¡û
>W1711485236
MKDR01000007
Bacillota
Latilactobacillus curvatus [MKDR]
115132
115219
+
Ser
CGA
[ENA]
¡û
>W1711487499
MKGB01000008
Bacillota
Latilactobacillus sakei [MKGB]
42082
41992
-
Ser
CGA
[ENA]
¡û
>W1711487536
MKGC01000001
Bacillota
Latilactobacillus curvatus [MKGC]
107448
107535
+
Ser
CGA
[ENA]
¡û
>W1711487559
MKGD01000001
Bacillota
Latilactobacillus curvatus [MKGD]
442
355
-
Ser
CGA
[ENA]
¡û
>C171057576
CP017124
Bacillota
Latilactobacillus curvatus WiKim38 [CP017124]
1273613
1273526
-
Ser
CGA
-
¡û
>W131196462
ASTI01000011
Bacillota
Latilactobacillus sakei subsp. sakei LS25 [ASTI]
18079
18166
+
Ser
CGA
[ENA]
¡û
>C012634
CR936503
Bacillota
Latilactobacillus sakei subsp. sakei 23K [CR936503]
723096
723183
+
Ser
CGA
[Ensembl]
¡û
>W141228340
BALW01000001
Bacillota
Latilactobacillus sakei subsp. sakei JCM 1157 [BALW]
377232
377145
-
Ser
CGA
[ENA]
¡û
>WENV182519762
OIWP01073440
[OIWP] human gut metagenome; faeces
143
56
-
Ser
CGA
[ENA]
¢þ
>C181003625
AP017929
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 LT-13 [AP017929]
1703779
1703692
-
Ser
CGA
-
¡û
>C181003717
AP017931
Bacillota
Latilactobacillus sakei LK-145 [AP017931]
1184501
1184413
-
Ser
CGA
-
¡û
>C181027264
CP017697
Bacillota
Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC [CP017697]
1447541
1447628
+
Ser
CGA
-
¡û
>C181027714
CP017713
Bacillota
Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM DSM 20001 [CP017713]
1391177
1391264
+
Ser
CGA
-
¡û
>C181044626
CP020459
Bacillota
Latilactobacillus sakei FAM18311 [CP020459]
711477
711564
+
Ser
CGA
-
¡û
>C181066111
CP022474
Bacillota
Latilactobacillus curvatus MRS6 [CP022474]
1365821
1365734
-
Ser
CGA
-
¡û
>C181066178
CP022475
Bacillota
Latilactobacillus curvatus KG6 [CP022475]
1353160
1353073
-
Ser
CGA
-
¡û
>C181071488
CP022709
Bacillota
Latilactobacillus sakei WiKim0063 [CP022709]
281910
281997
+
Ser
CGA
-
¡û
>C181113667
CP025136
Bacillota
Latilactobacillus sakei WiKim0072 [CP025136]
1585948
1586035
+
Ser
CGA
-
¡û
>C181114125
CP025206
Bacillota
Latilactobacillus sakei WiKim0074 [CP025206]
374413
374326
-
Ser
CGA
-
¡û
>C181123547
CP025839
Bacillota
Latilactobacillus sakei DS4 [CP025839]
814523
814610
+
Ser
CGA
-
¡û
>C181186108
CP029966
Bacillota
Latilactobacillus curvatus ZJUNIT8 [CP029966]
1222341
1222254
-
Ser
CGA
-
¡û
>C181194852
CP031003
Bacillota
Latilactobacillus curvatus TMW 1.1928 [CP031003]
1327723
1327636
-
Ser
CGA
-
¡û
>C181227435
LT960777
Bacillota
Latilactobacillus sakei FLEC01 [LT960777]
728742
728829
+
Ser
CGA
-
¡û
>C181227491
LT960781
Bacillota
Latilactobacillus sakei J64 [LT960781]
813315
813402
+
Ser
CGA
-
¡û
>C181227554
LT960784
Bacillota
Latilactobacillus sakei [LT960784]
787445
787532
+
Ser
CGA
-
¡û
>C181227615
LT960788
Bacillota
Latilactobacillus sakei MFPB16A1401 [LT960788]
818576
818663
+
Ser
CGA
-
¡û
>C181227676
LT960790
Bacillota
Latilactobacillus sakei J54 [LT960790]
766917
767004
+
Ser
CGA
-
¡û
>C191035508
CP025476
Bacillota
Latilactobacillus curvatus IRG2 [CP025476]
692981
693068
+
Ser
CGA
-
¡û
>C191040493
CP026116
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [CP026116]
250948
251035
+
Ser
CGA
-
¡û
>C191092643
CP032633
Bacillota
Latilactobacillus sakei ZFM220 [CP032633]
1101425
1101512
+
Ser
CGA
-
¡û
>C191092706
CP032635
Bacillota
Latilactobacillus sakei ZFM225 [CP032635]
787088
787175
+
Ser
CGA
-
¡û
>C191092826
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
637222
637309
+
Ser
CGA
-
¡û
>C191093037
CP032652
Bacillota
Latilactobacillus sakei LZ217 [CP032652]
1059636
1059549
-
Ser
CGA
-
¡û
>C191134900
CP035110
Bacillota
Latilactobacillus curvatus SRCM103465 [CP035110]
1346051
1345964
-
Ser
CGA
-
¡û
>W09127591
ACLD01000008
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [ACLD]
10874
10961
+
Ser
CGA
[ENA]
¡û
>W1910180945
BJLN01000007
Bacillota
Latilactobacillus sakei NBRC 3541 [BJLN]
96039
95952
-
Ser
CGA
[ENA]
¡û
>W1910184429
BJOQ01000002
Bacillota
Latilactobacillus curvatus NBRC 15884 [BJOQ]
26491
26404
-
Ser
CGA
[ENA]
¡û
>W1910471959
FXDK01000014
Bacillota
Latilactobacillus curvatus [FXDK]
6639
6726
+
Ser
CGA
[ENA]
¡û
>W1910751891
MKDL01000020
Bacillota
Latilactobacillus sakei RI-493 [MKDL]
44010
43923
-
Ser
CGA
[ENA]
¡û
>W1910751925
MKDM01000005
Bacillota
Latilactobacillus sakei RI-496 [MKDM]
56478
56391
-
Ser
CGA
[ENA]
¡û
>W1910751956
MKDN01000007
Bacillota
Latilactobacillus sakei RI-499 [MKDN]
43987
43900
-
Ser
CGA
[ENA]
¡û
>W1910752022
MKDO01000013
Bacillota
Latilactobacillus sakei RI-500 [MKDO]
56415
56328
-
Ser
CGA
[ENA]
¡û
>W1910752995
MKGG01000001
Bacillota
Latilactobacillus sakei RI-516 [MKGG]
10895
10982
+
Ser
CGA
[ENA]
¡û
>W1910753050
MKGH01000040
Bacillota
Latilactobacillus sakei RI-517 [MKGH]
42083
41996
-
Ser
CGA
[ENA]
¡û
>W1911493376
OBHJ01000004
Bacillota
Latilactobacillus sakei J18 [OBHJ]
12660
12747
+
Ser
CGA
[ENA]
¡û
>W1911493414
OBHK01000005
Bacillota
Latilactobacillus sakei J160x1 [OBHK]
10968
11055
+
Ser
CGA
[ENA]
¡û
>W1911493475
OBHL01000017
Bacillota
Latilactobacillus sakei J156 [OBHL]
111720
111807
+
Ser
CGA
[ENA]
¡û
>W1911493559
OBHN01000006
Bacillota
Latilactobacillus sakei J112 [OBHN]
10968
11055
+
Ser
CGA
[ENA]
¡û
>W1911533864
OKRC01000001
Bacillota
Latilactobacillus sakei CECT 9267 [OKRC]
61354
61441
+
Ser
CGA
[ENA]
¡û
>W1911551476
OVTU01000001
Bacillota
Latilactobacillus sakei CECT 9624 [OVTU]
919043
919130
+
Ser
CGA
[ENA]
¡û
>W1911631478
PUFE01000027
Bacillota
Latilactobacillus sakei subsp. sakei ATCC 15521 [PUFE]
378595
378508
-
Ser
CGA
[ENA]
¡û
>W1911632119
PUFO01000068
Bacillota
Secundilactobacillus malefermentans ATCC 49373 [PUFO]
77921
78008
+
Ser
CGA
[ENA]
¡û
>W1911706042
QOSE01000002
Bacillota
Latilactobacillus sakei TMW 1.411 [QOSE]
100115
100202
+
Ser
CGA
[ENA]
¡û
>WENV11100355
AEKF01000106
Food metagenome, Jonggazip commercial cabbage kimchi
6596
6509
-
Ser
CGA
[ENA]
¡û
>W1511344700
JRFY01000019
Bacillota
Latilactobacillus sakei wikim 22 [JRFY]
31903
31816
-
Ser
CGA
[ENA]
¡û
>W1511402288
JTJV01000068
Bacillota
Latilactobacillus curvatus NRIC0822 [JTJV]
7342
7429
+
Ser
CGA
[ENA]
¡û
>W11140757
AELK01000061
Bacillota
Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 [AELK]
39685
39598
-
Ser
CGA
[ENA]
¡û
>W11142113
AEOS01000358
Bacillota
Loigolactobacillus coryniformis subsp. torquens KCTC 3535 [AEOS]
3848
3761
-
Ser
CGA
[ENA]
¡û
>W11184784
BACN01000051
Bacillota
Secundilactobacillus malefermentans KCTC 3548 [BACN]
11444
11357
-
Ser
CGA
[ENA]
¡û
>C161093460
CP016028
Bacillota
Latilactobacillus curvatus FBA2 [CP016028]
744937
745024
+
Ser
CGA
-
¡û
>C161100184
CP016602
Bacillota
Latilactobacillus curvatus WiKim52 [CP016602]
1738793
1738706
-
Ser
CGA
[Ensembl]
¡û
>W121008333
AGBU01000107
Bacillota
Latilactobacillus curvatus CRL 705 [AGBU]
1066
1153
+
Ser
CGA
[ENA]
¡û
>W121081226
AKFP01000002
Bacillota
Loigolactobacillus coryniformis subsp. coryniformis CECT 5711 [AKFP]
90198
90111
-
Ser
CGA
[ENA]
¡û
>W1610032907
AZCN01000115
Bacillota
Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM [AZCN]
262
349
+
Ser
CGA
[ENA]
¡û
>W1610033645
AZDC01000176
Bacillota
Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 [AZDC]
208
295
+
Ser
CGA
[ENA]
¡û
>W1610034072
AZDL01000005
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [AZDL]
24239
24152
-
Ser
CGA
[ENA]
¡û
>W1610034149
AZDN01000001
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
155379
155466
+
Ser
CGA
[ENA]
¡û
>W1610036382
AZFG01000049
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
154589
154676
+
Ser
CGA
[ENA]
¡û
>W1610037878
AZGJ01000002
Bacillota
Secundilactobacillus malefermentans DSM 5705 = KCTC 3548 [AZGJ]
11465
11378
-
Ser
CGA
[ENA]
¡û
>W1610045546
BBBQ01000002
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
68790
68877
+
Ser
CGA
[ENA]
¡û
>W1610909539
LSFF01000005
Bacillota
Latilactobacillus sakei [LSFF]
721
634
-
Ser
CGA
[ENA]
¡û
>W1710030238
AZCN01000115
Bacillota
Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM [AZCN]
262
349
+
Ser
CGA
[ENA]
¡û
>W1710030823
AZDC01000176
Bacillota
Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 [AZDC]
208
295
+
Ser
CGA
[ENA]
¡û
>W1710031199
AZDL01000005
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [AZDL]
24239
24152
-
Ser
CGA
[ENA]
¡û
>W1710031276
AZDN01000001
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
155379
155466
+
Ser
CGA
[ENA]
¡û
>W1710033421
AZFG01000049
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
154589
154676
+
Ser
CGA
[ENA]
¡û
>W1710034917
AZGJ01000002
Bacillota
Secundilactobacillus malefermentans DSM 5705 = KCTC 3548 [AZGJ]
11465
11378
-
Ser
CGA
[ENA]
¡û
>W1710042387
BBBQ01000002
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
68790
68877
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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