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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.311624 (100 seq.)
>W1711055120
LRUI01000012
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
81310
81385
+
His
GTG
[ENA]
¡û
>W1711055133
LRUI01000026
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
20217
20292
+
His
GTG
[ENA]
¡û
>W1711078267
LSMS01000102
Gammaproteobacteria
Colwellia sp. Phe_37 [LSMS]
3383
3458
+
His
GTG
[ENA]
¡û
>W1711624677
MPHL01000009
Gammaproteobacteria
Colwellia sp. UCD-KL20 [MPHL]
93111
93186
+
His
GTG
[ENA]
¡û
>W1711947470
NBOD01000001
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
439994
440069
+
His
GTG
[ENA]
¡û
>W1711947504
NBOD01000005
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
162291
162216
-
His
GTG
[ENA]
¡û
>C171066066
CP017689
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [CP017689]
1079821
1079896
+
His
GTG
-
¡û
>C171066095
CP017689
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [CP017689]
3758538
3758463
-
His
GTG
-
¡û
>C171108349
CP020465
Gammaproteobacteria
Cognaticolwellia beringensis NB097-1 [CP020465]
1708751
1708826
+
His
GTG
-
¡û
>C171108362
CP020465
Gammaproteobacteria
Cognaticolwellia beringensis NB097-1 [CP020465]
3104314
3104389
+
His
GTG
-
¡û
>WENV182542990
OJAZ01012680
[OJAZ] seawater metagenome; Sea water
679
604
-
His
GTG
[ENA]
¢þ
>WENV182545089
OJBM01000037
[OJBM] seawater metagenome; Sea water
81711
81786
+
His
GTG
[ENA]
¢þ
>WENV182549847
OJBZ01000121
[OJBZ] seawater metagenome; Sea water
13345
13420
+
His
GTG
[ENA]
¢þ
>WENV182551669
OJCF01002515
[OJCF] seawater metagenome; Sea water
74
-1
-
His
GTG
[ENA]
¢þ
>WENV182552385
OJCK01000008
[OJCK] seawater metagenome; Sea water
16535
16610
+
His
GTG
[ENA]
¢þ
>WENV182554586
OJCW01000005
[OJCW] seawater metagenome; Sea water
58360
58285
-
His
GTG
[ENA]
¢þ
>WENV182554648
OJCW01000397
[OJCW] seawater metagenome; Sea water
10956
10881
-
His
GTG
[ENA]
¢þ
>WENV182554649
OJCW01000410
[OJCW] seawater metagenome; Sea water
4926
4851
-
His
GTG
[ENA]
¢þ
>WENV182556820
OJDH01000167
[OJDH] seawater metagenome; Sea water
26252
26327
+
His
GTG
[ENA]
¢þ
>WENV182557703
OJDK01002747
[OJDK] seawater metagenome; Sea water
994
1069
+
His
GTG
[ENA]
¢þ
>WENV182557812
OJDL01000036
[OJDL] seawater metagenome; Sea water
2582
2657
+
His
GTG
[ENA]
¢þ
>WENV182559225
OJDO01005057
[OJDO] seawater metagenome; Sea water
1187
1112
-
His
GTG
[ENA]
¢þ
>WENV182559970
OJDR01000040
[OJDR] seawater metagenome; Sea water
4863
4938
+
His
GTG
[ENA]
¢þ
>WENV182559995
OJDR01000110
[OJDR] seawater metagenome; Sea water
31641
31566
-
His
GTG
[ENA]
¢þ
>WENV182560647
OJDU01014112
[OJDU] seawater metagenome; Sea water
99
174
+
His
GTG
[ENA]
¢þ
>WENV182561193
OJDV01012960
[OJDV] seawater metagenome; Sea water
163
238
+
His
GTG
[ENA]
¢þ
>WENV182562412
OJDZ01002440
[OJDZ] seawater metagenome; Sea water
4026
3951
-
His
GTG
[ENA]
¢þ
>WENV182567125
OJEN01003721
[OJEN] seawater metagenome; Sea water
2124
2199
+
His
GTG
[ENA]
¢þ
>WENV182567447
OJEO01001165
[OJEO] seawater metagenome; Sea water
1818
1743
-
His
GTG
[ENA]
¢þ
>WENV182567743
OJEP01000100
[OJEP] seawater metagenome; Sea water
7682
7607
-
His
GTG
[ENA]
¢þ
>WENV182568172
OJEQ01004552
[OJEQ] seawater metagenome; Sea water
153
78
-
His
GTG
[ENA]
¢þ
>WENV182568814
OJEX01000020
[OJEX] seawater metagenome; Sea water
129580
129505
-
His
GTG
[ENA]
¢þ
>WENV182572495
OJFL01013995
[OJFL] seawater metagenome; Sea water
494
419
-
His
GTG
[ENA]
¢þ
>WENV182573391
OJFP01001274
[OJFP] seawater metagenome; Sea water
3423
3348
-
His
GTG
[ENA]
¢þ
>WENV182575227
OJFU01001353
[OJFU] seawater metagenome; Sea water
5899
5824
-
His
GTG
[ENA]
¢þ
>WENV182575948
OJFX01000692
[OJFX] seawater metagenome; Sea water
6797
6722
-
His
GTG
[ENA]
¢þ
>WENV182577689
OJGH01001044
[OJGH] seawater metagenome; Sea water
927
852
-
His
GTG
[ENA]
¢þ
>WENV182578796
OJGP01003394
[OJGP] seawater metagenome; Sea water
1297
1372
+
His
GTG
[ENA]
¢þ
>WENV182579675
OJGT01000001
[OJGT] seawater metagenome; Sea water
11775
11700
-
His
GTG
[ENA]
¢þ
>WENV182580081
OJGU01003090
[OJGU] seawater metagenome; Sea water
3186
3111
-
His
GTG
[ENA]
¢þ
>WENV182580871
OJGW01021733
[OJGW] seawater metagenome; Sea water
723
798
+
His
GTG
[ENA]
¢þ
>WENV182581694
OJGX01043609
[OJGX] seawater metagenome; Sea water
77
2
-
His
GTG
[ENA]
¢þ
>WENV182586629
OJHK01002002
[OJHK] seawater metagenome; Sea water
4320
4395
+
His
GTG
[ENA]
¢þ
>WENV182591619
OJIO01000865
[OJIO] seawater metagenome; Sea water
1062
1137
+
His
GTG
[ENA]
¢þ
>WENV182592412
OJIR01000443
[OJIR] seawater metagenome; Sea water
12404
12329
-
His
GTG
[ENA]
¢þ
>WENV182592573
OJIR01004502
[OJIR] seawater metagenome; Sea water
1194
1269
+
His
GTG
[ENA]
¢þ
>WENV183053752
OLGQ01002940
[OLGQ] seawater metagenome; Sea water
524
449
-
His
GTG
[ENA]
¢þ
>WENV183055428
OLHB01005552
[OLHB] seawater metagenome; Sea water
122
197
+
His
GTG
[ENA]
¢þ
>WENV183055684
OLHF01000055
[OLHF] seawater metagenome; Sea water
33761
33686
-
His
GTG
[ENA]
¢þ
>WENV183056156
OLHI01000395
[OLHI] seawater metagenome; Sea water
6396
6321
-
His
GTG
[ENA]
¢þ
>WENV183064726
OLII01000179
[OLII] seawater metagenome; Sea water
24009
24084
+
His
GTG
[ENA]
¢þ
>WENV170537095
CEWQ01000412
[CEWQ] marine metagenome genome assembly TARA_085_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
165
90
-
His
GTG
[ENA]
¢þ
>WENV170704712
LLEM01000316
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
769
692
-
His
GTG
[ENA]
¢þ
>WENV170704824
LLEN01001017
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
74
149
+
His
GTG
[ENA]
¢þ
>WENV170780703
MAAB01015245
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
316
391
+
His
GTG
[ENA]
¢þ
>WENV170780718
MAAB01017218
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
472
547
+
His
GTG
[ENA]
¢þ
>WENV170780962
MAAB01028896
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
65587
65512
-
His
GTG
[ENA]
¢þ
>WENV170780998
MAAB01028972
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
205
130
-
His
GTG
[ENA]
¢þ
>WENV170781074
MAAB01029286
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
14551
14626
+
His
GTG
[ENA]
¢þ
>WENV170781077
MAAB01029352
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
41421
41346
-
His
GTG
[ENA]
¢þ
>WENV170781085
MAAB01029362
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
101448
101523
+
His
GTG
[ENA]
¢þ
>WENV170781170
MAAB01029591
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
895
820
-
His
GTG
[ENA]
¢þ
>WENV170781189
MAAB01029650
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1497
1572
+
His
GTG
[ENA]
¢þ
>WENV170781228
MAAB01029738
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
2326
2401
+
His
GTG
[ENA]
¢þ
>WENV170781282
MAAB01030802
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
639
564
-
His
GTG
[ENA]
¢þ
>WENV170781293
MAAB01031334
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1683
1608
-
His
GTG
[ENA]
¢þ
>WENV170781310
MAAB01032045
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
2781
2856
+
His
GTG
[ENA]
¢þ
>WENV170781806
MAAC01000713
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
350
275
-
His
GTG
[ENA]
¢þ
>WENV170782091
MAAC01008225
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
16
91
+
His
GTG
[ENA]
¢þ
>WENV170782440
MAAC01009941
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
117557
117482
-
His
GTG
[ENA]
¢þ
>WENV170782459
MAAC01010053
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
7603
7528
-
His
GTG
[ENA]
¢þ
>WENV170782532
MAAC01010180
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
56559
56484
-
His
GTG
[ENA]
¢þ
>WENV170782542
MAAC01010191
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
26624
26549
-
His
GTG
[ENA]
¢þ
>WENV170782885
MAAC01011668
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
1927
1852
-
His
GTG
[ENA]
¢þ
>WENV170782920
MAAC01012086
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
62634
62559
-
His
GTG
[ENA]
¢þ
>WENV170782957
MAAC01012178
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
300
375
+
His
GTG
[ENA]
¢þ
>WENV170783127
MAAC01013903
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
5514
5439
-
His
GTG
[ENA]
¢þ
>WENV170783155
MAAC01014475
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
4530
4605
+
His
GTG
[ENA]
¢þ
>WENV170783176
MAAC01014698
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
25946
25871
-
His
GTG
[ENA]
¢þ
>WENV170783192
MAAC01014797
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
901
976
+
His
GTG
[ENA]
¢þ
>WENV170783210
MAAC01014870
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
446
371
-
His
GTG
[ENA]
¢þ
>WENV170783220
MAAC01015069
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
7083
7008
-
His
GTG
[ENA]
¢þ
>WENV170783236
MAAC01015225
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
7008
7083
+
His
GTG
[ENA]
¢þ
>WENV170783646
MAAC01018307
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
72078
72003
-
His
GTG
[ENA]
¢þ
>WENV170783671
MAAC01018358
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
29070
29145
+
His
GTG
[ENA]
¢þ
>C181169219
CP028897
Gammaproteobacteria
Dongshaea marina DM2 [CP028897]
88320
88395
+
His
GTG
-
¡û
>C181169253
CP028897
Gammaproteobacteria
Dongshaea marina DM2 [CP028897]
1716582
1716657
+
His
GTG
-
¡û
>W1911770212
QXIO01000003
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
456558
456633
+
His
GTG
[ENA]
¡û
>W1511322688
JQDZ01000009
Gammaproteobacteria
Thalassotalea sp. ND16A [JQDZ]
54530
54455
-
His
GTG
[ENA]
¡û
>W1511322748
JQDZ01000123
Gammaproteobacteria
Thalassotalea sp. ND16A [JQDZ]
147370
147445
+
His
GTG
[ENA]
¡û
>W1511322866
JQEC01000011
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
358890
358815
-
His
GTG
[ENA]
¡û
>W1511322894
JQEC01000040
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
71222
71297
+
His
GTG
[ENA]
¡û
>C161052258
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
3871309
3871384
+
His
GTG
[Ensembl]
¡û
>C161052270
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
3084815
3084740
-
His
GTG
[Ensembl]
¡û
>W1610896166
LRUI01000012
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
81310
81385
+
His
GTG
[ENA]
¡û
>W1610896179
LRUI01000026
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
20217
20292
+
His
GTG
[ENA]
¡û
>W1610917283
LSMS01000102
Gammaproteobacteria
Colwellia sp. Phe_37 [LSMS]
3383
3458
+
His
GTG
[ENA]
¡û
>W1710087354
BDQM01000018
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
57460
57385
-
His
GTG
[ENA]
¡û
>W1710087389
BDQM01000137
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
230
305
+
His
GTG
[ENA]
¡û
>W1710545505
FOBN01000026
Gammaproteobacteria
Pasteurella skyensis [FOBN]
26190
26265
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK