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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.31170 (7 seq.)
>C025533
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
1240471
1240385
-
Ser
TGA
[Ensembl]
¡û
>WENV180013445
FMSI01084587
[FMSI] soil metagenome; Soil
3
89
+
Ser
TGA
[ENA]
¢þ
>WENV181414372
OGCL01000284
[OGCL] hot springs metagenome; Hot spring water
41968
41882
-
Ser
TGA
[ENA]
¢þ
>C181030492
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
728782
728694
-
Ser
TGA
-
¡û
>C191001222
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
1353496
1353408
-
Ser
TGA
-
¡û
>C191085223
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
2386852
2386938
+
Ser
TGA
-
¡û
>C141007950
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
805720
805634
-
Ser
TGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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