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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.31171 (70 seq.)
>W1711009077
LQQL01000631
Bacillota
Weissella sp. DD23 [LQQL]
316
228
-
Ser
GCT
[ENA]
¡û
>W1711168500
LVYB01000033
Bacillota
Weissella cibaria [LVYB]
16747
16659
-
Ser
GCT
[ENA]
¡û
>W1711572595
MNBZ01000007
Bacillota
Weissella confusa [MNBZ]
2011
2101
+
Ser
GCT
[ENA]
¡û
>W1711999899
NDXJ01000009
Bacillota
Weissella cibaria [NDXJ]
1847
1935
+
Ser
GCT
[ENA]
¡û
>C171026220
CP013726
Bacillota
Weissella cibaria CMS2 [CP013726]
1172953
1173041
+
Ser
GCT
-
¡û
>C171029798
CP013934
Bacillota
Weissella cibaria CMS3 [CP013934]
712311
712399
+
Ser
GCT
-
¡û
>C171029884
CP013936
Bacillota
Weissella cibaria CMU [CP013936]
722795
722883
+
Ser
GCT
-
¡û
>WENV181557583
OGIV01044748
[OGIV] metagenome; Human gut stool
674
586
-
Ser
GCT
[ENA]
¢þ
>W141236492
BBIK01000006
Bacillota
Weissella hellenica [BBIK]
1855
1944
+
Ser
GCT
[ENA]
¡û
>W141240372
CAGH01000007
Bacillota
Weissella confusa LBAE C39-2 [CAGH]
1618
1708
+
Ser
GCT
[ENA]
¡û
>WENV182610914
OJJW01002435
[OJJW] metagenome; faeces
2398
2310
-
Ser
GCT
[ENA]
¢þ
>WENV183789095
PPYF01377663
[PPYF] human gut metagenome; stool from patient with Crohn's disease
105
193
+
Ser
GCT
[ENA]
¢þ
>C181047688
CP020928
Bacillota
Weissella cibaria M2 [CP020928]
1857749
1857661
-
Ser
GCT
-
¡û
>C181069788
CP022606
Bacillota
Weissella cibaria CMS1 [CP022606]
1016779
1016691
-
Ser
GCT
-
¡û
>C181143181
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
1252082
1252171
+
Ser
GCT
-
¡û
>C181152871
CP027427
Bacillota
Weissella cibaria BM2 [CP027427]
2317850
2317938
+
Ser
GCT
-
¡û
>C191013659
CP017326
Bacillota
Weissella soli KACC 11848 [CP017326]
1220246
1220158
-
Ser
GCT
-
¡û
>C191051630
CP027563
Bacillota
Weissella confusa VTT E-133279 [CP027563]
620120
620208
+
Ser
GCT
-
¡û
>C191051715
CP027565
Bacillota
Weissella confusa VTT E-90392 [CP027565]
599776
599864
+
Ser
GCT
-
¡û
>C191137900
CP035267
Bacillota
Weissella cibaria SRCM103448 [CP035267]
1713330
1713242
-
Ser
GCT
-
¡û
>C191188498
CP041193
Bacillota
Weissella cibaria CBA3612 [CP041193]
773488
773400
-
Ser
GCT
-
¡û
>W1910177468
BJDT01000004
Bacillota
Weissella sagaensis X0750 [BJDT]
181682
181593
-
Ser
GCT
[ENA]
¡û
>W1910178080
BJEF01000004
Bacillota
Weissella cibaria JCM 12495 [BJEF]
1792
1880
+
Ser
GCT
[ENA]
¡û
>W1910181235
BJLU01000005
Bacillota
Weissella viridescens NBRC 3949 [BJLU]
116398
116309
-
Ser
GCT
[ENA]
¡û
>W1910401446
FUWE01000018
Bacillota
Weissella confusa AB3E41 [FUWE]
1448
1536
+
Ser
GCT
[ENA]
¡û
>W1910638425
LRRC01000012
Bacillota
Weissella cibaria 110 [LRRC]
1663
1751
+
Ser
GCT
[ENA]
¡û
>W1911493538
OBHM01000012
Bacillota
Weissella viridescens MFPC16A2805 [OBHM]
1208
1297
+
Ser
GCT
[ENA]
¡û
>W1911634694
PVRY01000009
Bacillota
Weissella confusa CCUG 61560 [PVRY]
1831
1919
+
Ser
GCT
[ENA]
¡û
>W1911634772
PVRZ01000007
Bacillota
Weissella confusa CCUG 51220 [PVRZ]
1749
1837
+
Ser
GCT
[ENA]
¡û
>W1911634849
PVSA01000007
Bacillota
Weissella confusa CCUG 39518 [PVSA]
1709
1797
+
Ser
GCT
[ENA]
¡û
>W1911634925
PVSB01000013
Bacillota
Weissella confusa CCUG 37938 [PVSB]
1831
1919
+
Ser
GCT
[ENA]
¡û
>W1911635001
PVSC01000004
Bacillota
Weissella confusa CCUG 36556 [PVSC]
1749
1837
+
Ser
GCT
[ENA]
¡û
>W1911635123
PVSD01000027
Bacillota
Weissella confusa CCUG 30969 [PVSD]
308
220
-
Ser
GCT
[ENA]
¡û
>W1911635158
PVSE01000008
Bacillota
Weissella confusa F71 [PVSE]
1749
1837
+
Ser
GCT
[ENA]
¡û
>W1911635232
PVSF01000005
Bacillota
Weissella confusa EJ61 [PVSF]
1749
1837
+
Ser
GCT
[ENA]
¡û
>W1911635314
PVSG01000008
Bacillota
Weissella confusa EJ52 [PVSG]
1749
1837
+
Ser
GCT
[ENA]
¡û
>W1911635392
PVSH01000011
Bacillota
Weissella confusa EJ12 [PVSH]
1709
1797
+
Ser
GCT
[ENA]
¡û
>W1911635467
PVSI01000014
Bacillota
Weissella confusa VTT E-163496 [PVSI]
1749
1837
+
Ser
GCT
[ENA]
¡û
>W1911635547
PVSJ01000002
Bacillota
Weissella confusa VTT E-153460 [PVSJ]
1749
1837
+
Ser
GCT
[ENA]
¡û
>W1911635667
PVSK01000034
Bacillota
Weissella confusa VTT E-153457 [PVSK]
310
222
-
Ser
GCT
[ENA]
¡û
>W1911635703
PVSL01000002
Bacillota
Weissella confusa VTT E-143403 [PVSL]
1749
1837
+
Ser
GCT
[ENA]
¡û
>W1911635782
PVSM01000006
Bacillota
Weissella confusa VTT E-072748 [PVSM]
1749
1837
+
Ser
GCT
[ENA]
¡û
>W1911635861
PVSN01000021
Bacillota
Weissella confusa VTT E-062653 [PVSN]
1758
1846
+
Ser
GCT
[ENA]
¡û
>W1911635937
PVSO01000019
Bacillota
Weissella confusa VTT E-95616 [PVSO]
1590
1678
+
Ser
GCT
[ENA]
¡û
>W1911636015
PVSP01000004
Bacillota
Weissella confusa VTT E-90393 [PVSP]
1749
1837
+
Ser
GCT
[ENA]
¡û
>W1810576400
QENM01000004
Bacillota
Weissella confusa 32 [QENM]
1749
1837
+
Ser
GCT
[ENA]
¡û
>W1810784471
QRAS01000001
Bacillota
Weissella soli CECT 7031 [QRAS]
830610
830522
-
Ser
GCT
[ENA]
¡û
>W1810816490
QSBT01000001
Bacillota
Weissella confusa AF03-13 [QSBT]
423854
423766
-
Ser
GCT
[ENA]
¡û
>W1810828838
QSKQ01000004
Bacillota
Weissella cibaria AM27-24 [QSKQ]
461
549
+
Ser
GCT
[ENA]
¡û
>W1810828908
QSKR01000004
Bacillota
Weissella cibaria AM27-22LB [QSKR]
1754
1842
+
Ser
GCT
[ENA]
¡û
>W1810842392
QSVX01000015
Bacillota
Weissella cibaria OF06-4 [QSVX]
6822
6910
+
Ser
GCT
[ENA]
¡û
>WENV11100354
AEKF01000096
Food metagenome, Jonggazip commercial cabbage kimchi
1629
1718
+
Ser
GCT
[ENA]
¡û
>W1510500359
CRHY01000036
Bacillota
Streptococcus pneumoniae SMRU1312 [CRHY]
1693
1783
+
Ser
GCT
[ENA]
¡û
>C11123765
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
1174689
1174778
+
Ser
GCT
[Ensembl]
¡û
>W1511479024
JWHT01000037
Bacillota
Weissella cibaria AB3b [JWHT]
63987
63899
-
Ser
GCT
[ENA]
¡û
>W1511479082
JWHU01000035
Bacillota
Weissella cibaria MG1 [JWHU]
535
623
+
Ser
GCT
[ENA]
¡û
>W1511479147
JWHV01000020
Bacillota
Weissella cibaria ff3PR [JWHV]
33183
33095
-
Ser
GCT
[ENA]
¡û
>W11140007
AEKT01000032
Bacillota
Weissella cibaria KACC 11862 [AEKT]
35571
35483
-
Ser
GCT
[ENA]
¡û
>C161046771
CP012873
Bacillota
Weissella cibaria CH2 [CP012873]
1154841
1154929
+
Ser
GCT
[Ensembl]
¡û
>W121082032
AKGG01000005
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
245830
245919
+
Ser
GCT
[ENA]
¡û
>W1610097800
CYXF01000148
Bacillota
Weissella viridescens [CYXF]
1873
1962
+
Ser
GCT
[ENA]
¡û
>W1610528127
JQAY01000003
Bacillota
Weissella confusa [JQAY]
250642
250552
-
Ser
GCT
[ENA]
¡û
>W1610528719
JQBM01000003
Bacillota
Weissella viridescens [JQBM]
2131
2220
+
Ser
GCT
[ENA]
¡û
>W1610528856
JQBP01000003
Bacillota
Weissella kandleri [JQBP]
284542
284453
-
Ser
GCT
[ENA]
¡û
>W1610857597
LQQL01000631
Bacillota
Weissella sp. DD23 [LQQL]
316
228
-
Ser
GCT
[ENA]
¡û
>W1610978352
LVYB01000033
Bacillota
Weissella cibaria [LVYB]
16747
16659
-
Ser
GCT
[ENA]
¡û
>W1710100555
CYXF01000148
Bacillota
Weissella viridescens [CYXF]
1873
1962
+
Ser
GCT
[ENA]
¡û
>W1710629717
JQAY01000003
Bacillota
Weissella confusa [JQAY]
250642
250552
-
Ser
GCT
[ENA]
¡û
>W1710630309
JQBM01000003
Bacillota
Weissella viridescens [JQBM]
2131
2220
+
Ser
GCT
[ENA]
¡û
>W1710630446
JQBP01000003
Bacillota
Weissella kandleri [JQBP]
284542
284453
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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