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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.31194 (139 seq.)
>W1710926035
LODR01000009
Bacillota
Megasphaera sp. DJF_B143 [LODR]
16759
16849
+
Ser
GCT
[ENA]
¡û
>W131109501
APHX01000012
Bacillota
Megasphaera sp. BL7 [APHX]
2659
2749
+
Ser
GCT
[ENA]
¡û
>W131109597
APHY01000067
Bacillota
Megasphaera sp. NM10 [APHY]
2131
2221
+
Ser
GCT
[ENA]
¡û
>WENV180119053
OASD01007282
[OASD] human gut metagenome; ENVO:feces
1470
1560
+
Ser
GCT
[ENA]
¢þ
>WENV180184909
OAWS01004482
[OAWS] human gut metagenome; faeces
1017
927
-
Ser
GCT
[ENA]
¢þ
>WENV180189176
OAWX01014044
[OAWX] human gut metagenome; faeces
258
168
-
Ser
GCT
[ENA]
¢þ
>WENV180235098
OBCT01001364
[OBCT] human gut metagenome; human gut
1414
1504
+
Ser
GCT
[ENA]
¢þ
>WENV180235781
OBCU01000759
[OBCU] human gut metagenome; human gut
767
857
+
Ser
GCT
[ENA]
¢þ
>WENV180305754
OBJO01003326
[OBJO] human gut metagenome; human gut
1431
1341
-
Ser
GCT
[ENA]
¢þ
>WENV180340343
OBLI01021162
[OBLI] pig gut metagenome; faeces
2092
2182
+
Ser
GCT
[ENA]
¢þ
>WENV180575142
OCLX01119319
[OCLX] human gut metagenome; human gut
135
45
-
Ser
GCT
[ENA]
¢þ
>WENV180577156
OCMA01001234
[OCMA] human gut metagenome; human gut
772
682
-
Ser
GCT
[ENA]
¢þ
>WENV180578958
OCMC01008966
[OCMC] human gut metagenome; human gut
1483
1573
+
Ser
GCT
[ENA]
¢þ
>WENV180669041
OCVV011271930
[OCVV] gut metagenome; gut
16758
16848
+
Ser
GCT
[ENA]
¢þ
>WENV180669042
OCVV011271930
[OCVV] gut metagenome; gut
16758
16848
+
Ser
GCT
[ENA]
¢þ
>WENV180742894
ODHH01037171
[ODHH] human metagenome; G_DNA_Stool
176
86
-
Ser
GCT
[ENA]
¢þ
>WENV181132760
OEGE01014630
[OEGE] human metagenome; G_DNA_Stool
229
319
+
Ser
GCT
[ENA]
¢þ
>WENV181395244
OFRZ01014098
[OFRZ] human gut metagenome; human gut
242
152
-
Ser
GCT
[ENA]
¢þ
>WENV181434608
OGDF01001094
[OGDF] human gut metagenome; human gut
39743
39653
-
Ser
GCT
[ENA]
¢þ
>WENV181436001
OGDF01009015
[OGDF] human gut metagenome; human gut
4266
4176
-
Ser
GCT
[ENA]
¢þ
>WENV181457090
OGEH01006566
[OGEH] metagenome; Human gut stool
266
176
-
Ser
GCT
[ENA]
¢þ
>WENV181465224
OGEP01013222
[OGEP] metagenome; Human gut stool
2514
2604
+
Ser
GCT
[ENA]
¢þ
>WENV181506462
OGGM01003508
[OGGM] metagenome; Human gut stool
1063
973
-
Ser
GCT
[ENA]
¢þ
>WENV181511689
OGGS01005457
[OGGS] metagenome; Human gut stool
2586
2676
+
Ser
GCT
[ENA]
¢þ
>WENV181555292
OGIT01000783
[OGIT] metagenome; Human gut stool
8773
8683
-
Ser
GCT
[ENA]
¢þ
>WENV181577294
OGJX01000530
[OGJX] metagenome; Human gut stool
1467
1557
+
Ser
GCT
[ENA]
¢þ
>WENV181617043
OGLZ01016942
[OGLZ] metagenome; Human gut stool
689
779
+
Ser
GCT
[ENA]
¢þ
>WENV181676030
OGOP01027257
[OGOP] human gut metagenome; faeces
1506
1596
+
Ser
GCT
[ENA]
¢þ
>WENV181775556
OGRF01006996
[OGRF] human gut metagenome; faeces
3933
4023
+
Ser
GCT
[ENA]
¢þ
>WENV181795095
OGRS01020896
[OGRS] human gut metagenome; faeces
839
749
-
Ser
GCT
[ENA]
¢þ
>WENV181822573
OGUG01012312
[OGUG] metagenome; Human gut stool
923
1013
+
Ser
GCT
[ENA]
¢þ
>WENV181869236
OGWX01014952
[OGWX] human gut metagenome; faeces
1789
1879
+
Ser
GCT
[ENA]
¢þ
>WENV181872292
OGWZ01002028
[OGWZ] human gut metagenome; faeces
216
126
-
Ser
GCT
[ENA]
¢þ
>WENV181876493
OGXC01014447
[OGXC] human gut metagenome; faeces
1486
1576
+
Ser
GCT
[ENA]
¢þ
>WENV181884992
OGXJ01004109
[OGXJ] human gut metagenome; faeces
6307
6217
-
Ser
GCT
[ENA]
¢þ
>WENV181905364
OGXY01000075
[OGXY] human gut metagenome; faeces
1716
1806
+
Ser
GCT
[ENA]
¢þ
>WENV181911817
OGYD01004731
[OGYD] human gut metagenome; faeces
5315
5225
-
Ser
GCT
[ENA]
¢þ
>WENV181913708
OGYE01020385
[OGYE] human gut metagenome; faeces
1788
1878
+
Ser
GCT
[ENA]
¢þ
>WENV181923828
OGYL01002129
[OGYL] human gut metagenome; faeces
1958
2048
+
Ser
GCT
[ENA]
¢þ
>WENV181931771
OGYQ01002943
[OGYQ] human gut metagenome; faeces
2901
2991
+
Ser
GCT
[ENA]
¢þ
>WENV181934372
OGYT01006926
[OGYT] human gut metagenome; faeces
2099
2009
-
Ser
GCT
[ENA]
¢þ
>WENV181936825
OGYV01005131
[OGYV] human gut metagenome; faeces
4698
4608
-
Ser
GCT
[ENA]
¢þ
>WENV181939766
OGYX01005177
[OGYX] human gut metagenome; faeces
5236
5146
-
Ser
GCT
[ENA]
¢þ
>WENV181943698
OGYZ01029928
[OGYZ] human gut metagenome; faeces
937
1027
+
Ser
GCT
[ENA]
¢þ
>WENV181945454
OGZB01008417
[OGZB] human gut metagenome; faeces
1467
1557
+
Ser
GCT
[ENA]
¢þ
>WENV181949826
OGZF01011567
[OGZF] human gut metagenome; faeces
233
143
-
Ser
GCT
[ENA]
¢þ
>WENV181952251
OGZI01000101
[OGZI] human gut metagenome; faeces
118615
118525
-
Ser
GCT
[ENA]
¢þ
>WENV181959234
OGZM01003373
[OGZM] human gut metagenome; faeces
1589
1679
+
Ser
GCT
[ENA]
¢þ
>WENV181970370
OGZX01006945
[OGZX] human gut metagenome; faeces
1384
1474
+
Ser
GCT
[ENA]
¢þ
>WENV181976316
OHAD01000789
[OHAD] human gut metagenome; faeces
32642
32552
-
Ser
GCT
[ENA]
¢þ
>WENV181978280
OHAE01006472
[OHAE] human gut metagenome; faeces
3046
2956
-
Ser
GCT
[ENA]
¢þ
>WENV181981123
OHAG01000583
[OHAG] human gut metagenome; faeces
12087
11997
-
Ser
GCT
[ENA]
¢þ
>WENV181990756
OHAP01014321
[OHAP] human gut metagenome; faeces
1589
1679
+
Ser
GCT
[ENA]
¢þ
>WENV182000826
OHAY01000652
[OHAY] human gut metagenome; faeces
33213
33123
-
Ser
GCT
[ENA]
¢þ
>WENV182000904
OHAY01000864
[OHAY] human gut metagenome; faeces
15133
15043
-
Ser
GCT
[ENA]
¢þ
>WENV182008811
OHBJ01003814
[OHBJ] human gut metagenome; faeces
1414
1504
+
Ser
GCT
[ENA]
¢þ
>WENV182273637
OHUJ01002127
[OHUJ] human gut metagenome; feces
3315
3225
-
Ser
GCT
[ENA]
¢þ
>WENV182281634
OHVB01012225
[OHVB] human gut metagenome; feces
1396
1486
+
Ser
GCT
[ENA]
¢þ
>WENV182291435
OHVZ01002689
[OHVZ] human gut metagenome; feces
3315
3225
-
Ser
GCT
[ENA]
¢þ
>WENV182292686
OHWB01003701
[OHWB] human gut metagenome; feces
1315
1225
-
Ser
GCT
[ENA]
¢þ
>WENV182296494
OHWG01004225
[OHWG] human gut metagenome; feces
1511
1601
+
Ser
GCT
[ENA]
¢þ
>WENV182334374
OHZM01008464
[OHZM] human gut metagenome; feces
242
152
-
Ser
GCT
[ENA]
¢þ
>WENV182335977
OHZS01000990
[OHZS] human gut metagenome; feces
295
205
-
Ser
GCT
[ENA]
¢þ
>WENV182350575
OIBF01007806
[OIBF] human gut metagenome; feces
441
351
-
Ser
GCT
[ENA]
¢þ
>WENV182353253
OIBL01001188
[OIBL] human gut metagenome; feces
4481
4571
+
Ser
GCT
[ENA]
¢þ
>WENV182360484
OICB01004011
[OICB] human gut metagenome; feces
2278
2188
-
Ser
GCT
[ENA]
¢þ
>WENV182362024
OICD01003908
[OICD] human gut metagenome; feces
1477
1567
+
Ser
GCT
[ENA]
¢þ
>WENV182364342
OICH01001903
[OICH] human gut metagenome; feces
3312
3222
-
Ser
GCT
[ENA]
¢þ
>WENV182370826
OICT01005601
[OICT] human gut metagenome; feces
759
669
-
Ser
GCT
[ENA]
¢þ
>WENV182376241
OIDD01008062
[OIDD] human gut metagenome; feces
302
212
-
Ser
GCT
[ENA]
¢þ
>WENV182389767
OIED01003730
[OIED] human gut metagenome; feces
3111
3021
-
Ser
GCT
[ENA]
¢þ
>WENV182510892
OIWK01007879
[OIWK] human gut metagenome; faeces
1500
1590
+
Ser
GCT
[ENA]
¢þ
>WENV182517558
OIWO01010285
[OIWO] human gut metagenome; faeces
1015
925
-
Ser
GCT
[ENA]
¢þ
>WENV182526056
OIWT01006985
[OIWT] human gut metagenome; faeces
3306
3216
-
Ser
GCT
[ENA]
¢þ
>WENV182529669
OIWU01122399
[OIWU] human gut metagenome; faeces
249
339
+
Ser
GCT
[ENA]
¢þ
>WENV182656558
OJMJ01015056
[OJMJ] human gut metagenome; feces
1468
1378
-
Ser
GCT
[ENA]
¢þ
>WENV182659261
OJML01007550
[OJML] human gut metagenome; feces
3333
3243
-
Ser
GCT
[ENA]
¢þ
>WENV182757536
OJRH01008449
[OJRH] human gut metagenome; stool sample
218
128
-
Ser
GCT
[ENA]
¢þ
>WENV182767701
OJRV01001259
[OJRV] human gut metagenome; human gut
27286
27196
-
Ser
GCT
[ENA]
¢þ
>WENV182769202
OJRW01000790
[OJRW] human gut metagenome; human gut
27286
27196
-
Ser
GCT
[ENA]
¢þ
>WENV182770904
OJRX01001128
[OJRX] human gut metagenome; human gut
27286
27196
-
Ser
GCT
[ENA]
¢þ
>WENV182772265
OJRY01000753
[OJRY] human gut metagenome; human gut
27287
27197
-
Ser
GCT
[ENA]
¢þ
>WENV182773475
OJRZ01000810
[OJRZ] human gut metagenome; human gut
27287
27197
-
Ser
GCT
[ENA]
¢þ
>WENV182774687
OJSA01000765
[OJSA] human gut metagenome; human gut
5730
5820
+
Ser
GCT
[ENA]
¢þ
>WENV182776145
OJSB01002558
[OJSB] human gut metagenome; human gut
1571
1661
+
Ser
GCT
[ENA]
¢þ
>WENV182777289
OJSC01001147
[OJSC] human gut metagenome; human gut
2127
2217
+
Ser
GCT
[ENA]
¢þ
>WENV182779080
OJSD01001303
[OJSD] human gut metagenome; human gut
27286
27196
-
Ser
GCT
[ENA]
¢þ
>WENV182781063
OJSE01001511
[OJSE] human gut metagenome; human gut
2125
2215
+
Ser
GCT
[ENA]
¢þ
>WENV182782614
OJSF01000832
[OJSF] human gut metagenome; human gut
27286
27196
-
Ser
GCT
[ENA]
¢þ
>WENV182783707
OJSG01000736
[OJSG] human gut metagenome; human gut
1589
1679
+
Ser
GCT
[ENA]
¢þ
>WENV182784723
OJSH01000932
[OJSH] human gut metagenome; human gut
27286
27196
-
Ser
GCT
[ENA]
¢þ
>WENV182785851
OJSI01000788
[OJSI] human gut metagenome; human gut
27286
27196
-
Ser
GCT
[ENA]
¢þ
>WENV182786902
OJSJ01000837
[OJSJ] human gut metagenome; human gut
1414
1504
+
Ser
GCT
[ENA]
¢þ
>WENV182787701
OJSK01000840
[OJSK] human gut metagenome; human gut
27286
27196
-
Ser
GCT
[ENA]
¢þ
>WENV182788866
OJSL01001274
[OJSL] human gut metagenome; human gut
15212
15122
-
Ser
GCT
[ENA]
¢þ
>WENV182791671
OJSN01013005
[OJSN] human gut metagenome; human gut
1589
1679
+
Ser
GCT
[ENA]
¢þ
>WENV182793717
OJSP01001178
[OJSP] human gut metagenome; human gut
27287
27197
-
Ser
GCT
[ENA]
¢þ
>WENV182801651
OJUG01001548
[OJUG] human gut metagenome; human gut
27286
27196
-
Ser
GCT
[ENA]
¢þ
>WENV182871680
OKRV01000095
[OKRV] human gut metagenome; faeces
1442
1532
+
Ser
GCT
[ENA]
¢þ
>WENV182875771
OKRX01004665
[OKRX] human gut metagenome; faeces
5260
5170
-
Ser
GCT
[ENA]
¢þ
>WENV182882713
OKSB01001185
[OKSB] human gut metagenome; faeces
9354
9444
+
Ser
GCT
[ENA]
¢þ
>WENV182890129
OKSF01006830
[OKSF] human gut metagenome; faeces
3940
4030
+
Ser
GCT
[ENA]
¢þ
>WENV182924954
OKUI01003702
[OKUI] human gut metagenome; feces
1927
1837
-
Ser
GCT
[ENA]
¢þ
>WENV182926426
OKUM01000121
[OKUM] human gut metagenome; feces
52557
52647
+
Ser
GCT
[ENA]
¢þ
>WENV182929657
OKUQ01003472
[OKUQ] human gut metagenome; feces
2184
2274
+
Ser
GCT
[ENA]
¢þ
>WENV182932207
OKUU01000454
[OKUU] human gut metagenome; feces
12055
12145
+
Ser
GCT
[ENA]
¢þ
>WENV183023928
OLFS01013100
[OLFS] human gut metagenome; faeces
219
129
-
Ser
GCT
[ENA]
¢þ
>WENV183028721
OLFV01006243
[OLFV] human gut metagenome; faeces
3308
3218
-
Ser
GCT
[ENA]
¢þ
>WENV183080749
OLIY01010571
[OLIY] human gut metagenome; human gut
758
848
+
Ser
GCT
[ENA]
¢þ
>WENV183089328
OLJW01004137
[OLJW] human gut metagenome; human gut
8251
8161
-
Ser
GCT
[ENA]
¢þ
>WENV183091759
OLKG01003256
[OLKG] human gut metagenome; human gut
1402
1492
+
Ser
GCT
[ENA]
¢þ
>WENV183179084
OLPH01001337
[OLPH] human gut metagenome; faeces
15201
15111
-
Ser
GCT
[ENA]
¢þ
>WENV183206880
OLQA01003564
[OLQA] human gut metagenome; faeces
2044
2134
+
Ser
GCT
[ENA]
¢þ
>WENV183270124
OLRV01003570
[OLRV] human gut metagenome; faeces
9383
9293
-
Ser
GCT
[ENA]
¢þ
>WENV183332726
OLWD01005058
[OLWD] human gut metagenome; feces
2101
2011
-
Ser
GCT
[ENA]
¢þ
>WENV183344786
OLWQ01007395
[OLWQ] human gut metagenome; feces
1068
978
-
Ser
GCT
[ENA]
¢þ
>WENV183349879
OLWW01007606
[OLWW] human gut metagenome; feces
1593
1683
+
Ser
GCT
[ENA]
¢þ
>WENV183527162
ONZW01000065
[ONZW] human gut metagenome; human gut
1971
2061
+
Ser
GCT
[ENA]
¢þ
>WENV183552212
OOBJ01001550
[OOBJ] human gut metagenome; human gut
1769
1859
+
Ser
GCT
[ENA]
¢þ
>WENV183580785
OOCN01000465
[OOCN] human gut metagenome; human gut
35136
35046
-
Ser
GCT
[ENA]
¢þ
>WENV183599907
OODH01021065
[OODH] human gut metagenome; human gut
1038
1128
+
Ser
GCT
[ENA]
¢þ
>WENV183608656
OODQ01000047
[OODQ] human gut metagenome; human gut
127320
127230
-
Ser
GCT
[ENA]
¢þ
>WENV170074697
CDZT01004947
[CDZT] gut metagenome; human stools
143557
143467
-
Ser
GCT
[ENA]
¢þ
>WENV170076328
CDZU01000370
[CDZU] gut metagenome; human stools
1602
1692
+
Ser
GCT
[ENA]
¢þ
>C181011497
CP011940
Bacillota
Megasphaera hexanoica MH [CP011940]
2425592
2425502
-
Ser
GCT
-
¡û
>C181156471
CP027569
Bacillota
Megasphaera elsdenii NCIMB702410 [CP027569]
661548
661458
-
Ser
GCT
-
¡û
>C181156544
CP027570
Bacillota
Megasphaera elsdenii DSM 20460 ATCC 25940 [CP027570]
470797
470707
-
Ser
GCT
-
¡û
>W141559815
JHXC01000002
Bacillota
Megasphaera elsdenii T81 [JHXC]
203256
203166
-
Ser
GCT
[ENA]
¡û
>W1910212262
FMIV01000002
Bacillota
Caecibacter massiliensis Marseille-P2974 [FMIV]
763193
763103
-
Ser
GCT
[ENA]
¡û
>W1911179414
NQMW01000013
Bacillota
Megasphaera elsdenii indica [NQMW]
1836
1926
+
Ser
GCT
[ENA]
¡û
>W1810820843
QSFA01000003
Bacillota
Megasphaera sp. AM44-1BH [QSFA]
31027
31117
+
Ser
GCT
[ENA]
¡û
>W1511353868
JRPS01000008
Bacillota
Megasphaera elsdenii 24-50 [JRPS]
166899
166809
-
Ser
GCT
[ENA]
¡û
>C161021178
CP009240
Bacillota
Megasphaera elsdenii 14-14 [CP009240]
271822
271732
-
Ser
GCT
-
¡û
>C161104392
HE576794
Bacillota
Megasphaera elsdenii DSM 20460 [HE576794]
205647
205557
-
Ser
GCT
[Ensembl]
¡û
>W1610783640
LODR01000009
Bacillota
Megasphaera sp. DJF_B143 [LODR]
16759
16849
+
Ser
GCT
[ENA]
¡û
>WENV082376
BAAV01005300
Gut microbiome of Human (healthy human sample F1-T, Adult, Female)
400
308
-
Ser
GCT
[ENA]
>WENV083513
BAAX01030330
Gut microbiome of Human (healthy human sample F2-V, Adult, Male)
644
552
-
Ser
GCT
[ENA]
>W1710564623
FOQP01000031
Bacillota
Megasphaera elsdenii [FOQP]
3737
3647
-
Ser
GCT
[ENA]
¡û
>W1710589749
FRAK01000004
Bacillota
Megasphaera elsdenii [FRAK]
1751
1841
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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