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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.312230 (45 seq.)
>W131156478
AQPU01000036
Bacillota
Clostridium botulinum A1 str. CFSAN002368 [AQPU]
17957
17882
-
Met
CAT
[ENA]
¡û
>W131232710
AUJL01000032
Bacillota
Clostridium cadaveris AGR2141 [AUJL]
13221
13296
+
Met
CAT
[ENA]
¡û
>W1711791279
MWIW01000007
Bacillota
Clostridium botulinum [MWIW]
121876
121951
+
Met
CAT
[ENA]
¡û
>W1711791419
MWIY01000012
Bacillota
Clostridium botulinum [MWIY]
18246
18171
-
Met
CAT
[ENA]
¡û
>WENV180660591
OCVV010948696
[OCVV] gut metagenome; gut
315
240
-
fMet
CAT
[ENA]
¢þ
>WENV180660592
OCVV010948696
[OCVV] gut metagenome; gut
315
240
-
fMet
CAT
[ENA]
¢þ
>WENV181093627
OEBW01004451
[OEBW] human metagenome; G_DNA_Stool
2668
2743
+
fMet
CAT
[ENA]
¢þ
>W08001199
ABDP01000012
Bacillota
Clostridium botulinum Bf [ABDP]
22828
22756
-
Met
CAT
[ENA]
¡û
>W141212606
AZQW01000068
Bacillota
Clostridium botulinum CDC54075 [AZQW]
1560
1635
+
Met
CAT
[ENA]
¡û
>WENV182443750
OIKO01006490
[OIKO] human gut metagenome; human gut
120
47
-
fMet
CAT
[ENA]
¢þ
>WENV182448970
OILN01002158
[OILN] human gut metagenome; human gut
194
119
-
fMet
CAT
[ENA]
¢þ
>WENV182471479
OIPL01000733
[OIPL] human gut metagenome; human gut
3695
3770
+
fMet
CAT
[ENA]
¢þ
>WENV182528166
OIWU01001902
[OIWU] human gut metagenome; faeces
4451
4526
+
fMet
CAT
[ENA]
¢þ
>WENV182622482
OJKJ01045999
[OJKJ] metagenome; faeces
264
189
-
fMet
CAT
[ENA]
¢þ
>W141265815
CCFK01000015
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
138118
138193
+
Met
CAT
[ENA]
¡û
>WENV182749540
OJQY01000129
[OJQY] human gut metagenome; stool sample
39499
39424
-
fMet
CAT
[ENA]
¢þ
>WENV183086975
OLJF01115157
[OLJF] metagenome; faeces
86
161
+
fMet
CAT
[ENA]
¢þ
>WENV183139101
OLOI01000035
[OLOI] human gut metagenome; faeces
65202
65277
+
fMet
CAT
[ENA]
¢þ
>WENV183213675
OLQE01000023
[OLQE] human gut metagenome; faeces
65204
65279
+
fMet
CAT
[ENA]
¢þ
>WENV183492509
OMGI01000010
[OMGI] human gut metagenome; human gut
74268
74193
-
fMet
CAT
[ENA]
¢þ
>WENV183502218
OMGT01000019
[OMGT] human gut metagenome; human gut
34813
34738
-
fMet
CAT
[ENA]
¢þ
>WENV183536872
OOAG01018505
[OOAG] human gut metagenome; human gut
1659
1734
+
fMet
CAT
[ENA]
¢þ
>WENV170644072
JMBV01032884
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
81
156
+
Met
CAT
[ENA]
¢þ
>WENV170644690
JMBW01058986
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
82
157
+
Met
CAT
[ENA]
¢þ
>WENV170645221
JMBX01022668
[JMBX] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
81
156
+
Met
CAT
[ENA]
¢þ
>WENV170721317
LSQX01185594
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
235
310
+
Met
CAT
[ENA]
¢þ
>C181013707
CP013845
Bacillota
Clostridium botulinum A634 [CP013845]
3810295
3810220
-
Met
CAT
-
¡û
>C191010652
CP013686
Bacillota
Clostridium botulinum F1425 [CP013686]
318765
318690
-
Met
CAT
-
¡û
>C191010806
CP013707
Bacillota
Clostridium botulinum F634 [CP013707]
3734666
3734591
-
Met
CAT
-
¡û
>C09102926
CP001083
Bacillota
Clostridium botulinum Ba4 str. 657 [CP001083]
3865089
3865014
-
Met
CAT
[Ensembl]
¡û
>W1911493808
OBJM01000026
Bacillota
Clostridium cadaveris LH052 [OBJM]
16216
16291
+
Met
CAT
[ENA]
¡û
>W1911493811
OBJM01000026
Bacillota
Clostridium cadaveris LH052 [OBJM]
16522
16597
+
Met
CAT
[ENA]
¡û
>W1810898728
QVAF01000106
Bacillota
Clostridium botulinum CDC60006 [QVAF]
536
461
-
Met
CAT
[ENA]
¡û
>W1810898792
QVAG01000054
Bacillota
Clostridium botulinum CDC69043 [QVAG]
73497
73572
+
Met
CAT
[ENA]
¡û
>W1810898824
QVAH01000054
Bacillota
Clostridium botulinum CDC69057 [QVAH]
18181
18106
-
Met
CAT
[ENA]
¡û
>C151014274
CP006907
Bacillota
Clostridium botulinum CDC_297 [CP006907]
1969379
1969454
+
Met
CAT
[Ensembl]
¡û
>C151014329
CP006908
Bacillota
Clostridium botulinum CDC_1436 [CP006908]
531828
531903
+
Met
CAT
[Ensembl]
¡û
>W1511506905
JXMY01000020
Bacillota
Clostridium botulinum 277-00 [JXMY]
18072
17997
-
Met
CAT
[ENA]
¡û
>W1511565998
LAGH01000284
Bacillota
Clostridium sporogenes CDC24533 [LAGH]
824
749
-
Met
CAT
[ENA]
¡û
>W1610603984
LFQE01000009
Bacillota
Clostridium botulinum [LFQE]
122182
122257
+
Met
CAT
[ENA]
¡û
>W1610604104
LFQG01000031
Bacillota
Clostridium botulinum [LFQG]
21227
21302
+
Met
CAT
[ENA]
¡û
>W1710561467
FOOE01000021
Bacillota
Clostridium cadaveris [FOOE]
30211
30286
+
Met
CAT
[ENA]
¡û
>W1710561470
FOOE01000021
Bacillota
Clostridium cadaveris [FOOE]
30517
30592
+
Met
CAT
[ENA]
¡û
>W1710725500
LFQE01000009
Bacillota
Clostridium botulinum [LFQE]
122182
122257
+
Met
CAT
[ENA]
¡û
>W1710725620
LFQG01000031
Bacillota
Clostridium botulinum [LFQG]
21227
21302
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK