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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.31263 (104 seq.)
>W1710861064
LMDJ01000012
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
325025
324936
-
Ser
CGA
[ENA]
¡û
>W1710861065
LMDJ01000012
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
324904
324815
-
Ser
CGA
[ENA]
¡û
>W1710862090
LMEC01000026
Betaproteobacteria
Massilia sp. Root418 [LMEC]
311787
311698
-
Ser
CGA
[ENA]
¡û
>W1710862091
LMEC01000026
Betaproteobacteria
Massilia sp. Root418 [LMEC]
311666
311577
-
Ser
CGA
[ENA]
¡û
>W131050094
AMWD01000001
Betaproteobacteria
Janthinobacterium sp. HH01 [AMWD]
2582547
2582636
+
Ser
CGA
[ENA]
¡û
>W131050095
AMWD01000001
Betaproteobacteria
Janthinobacterium sp. HH01 [AMWD]
2582668
2582757
+
Ser
CGA
[ENA]
¡û
>W1711033347
LRHV01000017
Betaproteobacteria
Duganella sp. HH105 [LRHV]
96675
96764
+
Ser
CGA
[ENA]
¡û
>W1711033348
LRHV01000017
Betaproteobacteria
Duganella sp. HH105 [LRHV]
96796
96885
+
Ser
CGA
[ENA]
¡û
>W1711046673
LRON01000006
Betaproteobacteria
Duganella sp. HH101 [LRON]
291373
291284
-
Ser
CGA
[ENA]
¡û
>W1711046674
LRON01000006
Betaproteobacteria
Duganella sp. HH101 [LRON]
291252
291163
-
Ser
CGA
[ENA]
¡û
>W131176173
ARJV01000023
Betaproteobacteria
Duganella zoogloeoides ATCC 25935 [ARJV]
135104
135193
+
Ser
CGA
[ENA]
¡û
>W1711326609
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
343265
343176
-
Ser
CGA
[ENA]
¡û
>W1711385102
MEDS01000004
Betaproteobacteria
Comamonas sp. SCN 65-56 [MEDS]
16992
17081
+
Ser
CGA
[ENA]
¡û
>W1711409732
MGPC01000018
Betaproteobacteria
Curvibacter sp. GWA2_64_110 [MGPC]
262337
262426
+
Ser
CGA
[ENA]
¡û
>W1711502127
MKSJ01000136
Betaproteobacteria
Burkholderiales bacterium 66-5 [MKSJ]
5995
5906
-
Ser
CGA
[ENA]
¡û
>W1711680542
MRWK01000461
Betaproteobacteria
Comamonadaceae bacterium BIN2 [MRWK]
279
190
-
Ser
CGA
[ENA]
¡û
>W131050704
AMXA01000006
Betaproteobacteria
Thauera sp. 28 [AMXA]
44212
44301
+
Ser
CGA
[ENA]
¡û
>W131050755
AMXB01000005
Betaproteobacteria
Thauera sp. 27 [AMXB]
45029
45118
+
Ser
CGA
[ENA]
¡û
>C001367
CR555306
Betaproteobacteria
Aromatoleum aromaticum EbN1 [CR555306]
4155777
4155688
-
Ser
CGA
[Ensembl]
¡û
>WENV180029865
FTJL01010138
[FTJL] metagenome; soil
287
376
+
Ser
CGA
[ENA]
¢þ
>WENV180265389
OBEQ011654102
[OBEQ] groundwater metagenome; groundwater
631
542
-
Ser
CGA
[ENA]
¢þ
>WENV181227037
OFDN01001139
[OFDN] hot springs metagenome; Water
1125
1214
+
Ser
CGA
[ENA]
¢þ
>WENV181361166
OFNH01002093
[OFNH] sediment metagenome; Lake sediment
483
394
-
Ser
CGA
[ENA]
¢þ
>WENV181363097
OFOS01000006
[OFOS] sediment metagenome; Lake sediment
3124
3035
-
Ser
CGA
[ENA]
¢þ
>WENV181364505
OFOW01000273
[OFOW] sediment metagenome; Lake sediment
1997
1908
-
Ser
CGA
[ENA]
¢þ
>WENV181364542
OFOY01000014
[OFOY] sediment metagenome; Lake sediment
50450
50539
+
Ser
CGA
[ENA]
¢þ
>WENV181364604
OFOZ01000132
[OFOZ] sediment metagenome; Lake sediment
6358
6447
+
Ser
CGA
[ENA]
¢þ
>WENV181364670
OFPA01000080
[OFPA] sediment metagenome; Lake sediment
8941
9030
+
Ser
CGA
[ENA]
¢þ
>WENV181364708
OFPB01000012
[OFPB] sediment metagenome; Lake sediment
72095
72184
+
Ser
CGA
[ENA]
¢þ
>WENV181364833
OFPE01000680
[OFPE] sediment metagenome; Lake sediment
740
651
-
Ser
CGA
[ENA]
¢þ
>WENV181365009
OFPH01000301
[OFPH] sediment metagenome; Lake sediment
1371
1282
-
Ser
CGA
[ENA]
¢þ
>WENV181365037
OFPI01000013
[OFPI] sediment metagenome; Lake sediment
14286
14197
-
Ser
CGA
[ENA]
¢þ
>WENV181365095
OFPJ01000092
[OFPJ] sediment metagenome; Lake sediment
3124
3035
-
Ser
CGA
[ENA]
¢þ
>WENV181365138
OFPK01000014
[OFPK] sediment metagenome; Lake sediment
72171
72260
+
Ser
CGA
[ENA]
¢þ
>WENV181365170
OFPL01000004
[OFPL] sediment metagenome; Lake sediment
116515
116604
+
Ser
CGA
[ENA]
¢þ
>WENV181365230
OFPM01000410
[OFPM] sediment metagenome; Lake sediment
348
259
-
Ser
CGA
[ENA]
¢þ
>WENV181365265
OFPN01000003
[OFPN] sediment metagenome; Lake sediment
127301
127390
+
Ser
CGA
[ENA]
¢þ
>WENV181365333
OFPO01000100
[OFPO] sediment metagenome; Lake sediment
3047
2958
-
Ser
CGA
[ENA]
¢þ
>WENV181365382
OFPP01002253
[OFPP] sediment metagenome; Lake sediment
268
357
+
Ser
CGA
[ENA]
¢þ
>W141169058
AXVM01000005
Betaproteobacteria
Comamonas badia DSM 17552 [AXVM]
180948
181037
+
Ser
CGA
[ENA]
¡û
>WENV183687381
ORMF011138728
[ORMF] groundwater metagenome; groundwater
44894
44983
+
Ser
CGA
[ENA]
¢þ
>WENV170561127
CZCA01003231
[CZCA] anaerobic digester metagenome; anaerobic digester
5885
5974
+
Ser
CGA
[ENA]
¢þ
>WENV170609696
FUWD011470285
[FUWD] metagenome; unknown
141
52
-
Ser
CGA
[ENA]
¢þ
>WENV170650718
JRYE01013145
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
648
737
+
Ser
CGA
[ENA]
¢þ
>WENV170650724
JRYE01013547
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
8777
8688
-
Ser
CGA
[ENA]
¢þ
>WENV170652557
JRYH01006084
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
2429
2518
+
Ser
CGA
[ENA]
¢þ
>WENV170653037
JRYI01001198
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
11288
11199
-
Ser
CGA
[ENA]
¢þ
>WENV170713708
LNFM01039601
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1253
1342
+
Ser
CGA
[ENA]
¢þ
>W141463889
JFJV02000028
Betaproteobacteria
Cupriavidus sp. SK-3 [JFJV]
22120
22209
+
Ser
CGA
[ENA]
¡û
>C191019181
CP021731
Betaproteobacteria
Azoarcus sp. DN11 [CP021731]
3625804
3625715
-
Ser
CGA
-
¡û
>C191022918
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
1785925
1785836
-
Ser
CGA
-
¡û
>W1810486606
QAXZ01000005
Betaproteobacteria
Massilia sp. GV045 [QAXZ]
329281
329370
+
Ser
CGA
[ENA]
¡û
>W1810486607
QAXZ01000005
Betaproteobacteria
Massilia sp. GV045 [QAXZ]
329402
329491
+
Ser
CGA
[ENA]
¡û
>W1810487107
QAYI01000003
Betaproteobacteria
Massilia sp. GV016 [QAYI]
325002
324913
-
Ser
CGA
[ENA]
¡û
>W1810487108
QAYI01000003
Betaproteobacteria
Massilia sp. GV016 [QAYI]
324881
324792
-
Ser
CGA
[ENA]
¡û
>W1810672478
QJTL01000005
Betaproteobacteria
Duganella sp. GV083 [QJTL]
527935
527846
-
Ser
CGA
[ENA]
¡û
>W1810672479
QJTL01000005
Betaproteobacteria
Duganella sp. GV083 [QJTL]
527804
527715
-
Ser
CGA
[ENA]
¡û
>W1810672594
QJTN01000003
Betaproteobacteria
Massilia sp. GV024 [QJTN]
325002
324913
-
Ser
CGA
[ENA]
¡û
>W1810672595
QJTN01000003
Betaproteobacteria
Massilia sp. GV024 [QJTN]
324881
324792
-
Ser
CGA
[ENA]
¡û
>W1810677186
QKMN01000005
Betaproteobacteria
Duganella sp. GV053 [QKMN]
527935
527846
-
Ser
CGA
[ENA]
¡û
>W1810677187
QKMN01000005
Betaproteobacteria
Duganella sp. GV053 [QKMN]
527804
527715
-
Ser
CGA
[ENA]
¡û
>W1810693422
QLLJ01000005
Betaproteobacteria
Duganella sp. GV066 [QLLJ]
527935
527846
-
Ser
CGA
[ENA]
¡û
>W1810693423
QLLJ01000005
Betaproteobacteria
Duganella sp. GV066 [QLLJ]
527804
527715
-
Ser
CGA
[ENA]
¡û
>W1810694384
QLLZ01000005
Betaproteobacteria
Duganella sp. GV039 [QLLZ]
527935
527846
-
Ser
CGA
[ENA]
¡û
>W1810694385
QLLZ01000005
Betaproteobacteria
Duganella sp. GV039 [QLLZ]
527804
527715
-
Ser
CGA
[ENA]
¡û
>W1810787985
QREC01000005
Betaproteobacteria
Duganella sp. GV023 [QREC]
527935
527846
-
Ser
CGA
[ENA]
¡û
>W1810787986
QREC01000005
Betaproteobacteria
Duganella sp. GV023 [QREC]
527804
527715
-
Ser
CGA
[ENA]
¡û
>W1810885075
QUNB01000004
Betaproteobacteria
Duganella sp. GV032 [QUNB]
527935
527846
-
Ser
CGA
[ENA]
¡û
>W1810885076
QUNB01000004
Betaproteobacteria
Duganella sp. GV032 [QUNB]
527804
527715
-
Ser
CGA
[ENA]
¡û
>W1810885199
QUND01000005
Betaproteobacteria
Duganella sp. GV046 [QUND]
527935
527846
-
Ser
CGA
[ENA]
¡û
>W1810885200
QUND01000005
Betaproteobacteria
Duganella sp. GV046 [QUND]
527804
527715
-
Ser
CGA
[ENA]
¡û
>W1810885833
QUNP01000005
Betaproteobacteria
Duganella sp. GV038 [QUNP]
527935
527846
-
Ser
CGA
[ENA]
¡û
>W1810885834
QUNP01000005
Betaproteobacteria
Duganella sp. GV038 [QUNP]
527804
527715
-
Ser
CGA
[ENA]
¡û
>W1810886084
QUNU01000005
Betaproteobacteria
Duganella sp. GV067 [QUNU]
527935
527846
-
Ser
CGA
[ENA]
¡û
>W1810886085
QUNU01000005
Betaproteobacteria
Duganella sp. GV067 [QUNU]
527804
527715
-
Ser
CGA
[ENA]
¡û
>W1810908125
QVIL01000008
Betaproteobacteria
Duganella sp. BJB489 [QVIL]
106041
106130
+
Ser
CGA
[ENA]
¡û
>W1810908126
QVIL01000008
Betaproteobacteria
Duganella sp. BJB489 [QVIL]
106162
106251
+
Ser
CGA
[ENA]
¡û
>W1810908192
QVIM01000008
Betaproteobacteria
Duganella sp. BJB488 [QVIM]
106057
106146
+
Ser
CGA
[ENA]
¡û
>W1810908193
QVIM01000008
Betaproteobacteria
Duganella sp. BJB488 [QVIM]
106178
106267
+
Ser
CGA
[ENA]
¡û
>W1810908214
QVIN01000001
Betaproteobacteria
Duganella sp. BJB480 [QVIN]
135406
135495
+
Ser
CGA
[ENA]
¡û
>W1810908215
QVIN01000001
Betaproteobacteria
Duganella sp. BJB480 [QVIN]
135527
135616
+
Ser
CGA
[ENA]
¡û
>C151070621
CP010536
Betaproteobacteria
Cupriavidus basilensis 4G11 [CP010536, CP010537]
970950
971039
+
Ser
CGA
[Ensembl]
¡û
>C151076201
CP011072
Betaproteobacteria
Azoarcus sp. CIB [CP011072]
3446923
3446834
-
Ser
CGA
-
¡û
>W1510720096
CXON01000002
Betaproteobacteria
Limnohabitans sp. 2KL-3 [CXON]
37856
37767
-
Ser
CGA
[ENA]
¡û
>W1510766098
JANU01000051
Betaproteobacteria
Caenimonas sp. SL110 [JANU]
13860
13771
-
Ser
CGA
[ENA]
¡û
>W1511534657
JYOD01000036
Betaproteobacteria
Burkholderiaceae bacterium 16 [JYOD]
17980
18069
+
Ser
CGA
[ENA]
¡û
>W1511581008
LARU01000002
Betaproteobacteria
Azoarcus sp. PA01 [LARU]
139160
139071
-
Ser
CGA
[ENA]
¡û
>W121033618
AHJE01000105
Betaproteobacteria
Cupriavidus basilensis OR16 [AHJE]
20465
20554
+
Ser
CGA
[ENA]
¡û
>W1610076205
BCYO01000006
Betaproteobacteria
Polaromonas jejuensis NBRC 106434 [BCYO]
8053
7964
-
Ser
CGA
[ENA]
¡û
>W1610723410
LMDJ01000012
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
325025
324936
-
Ser
CGA
[ENA]
¡û
>W1610723411
LMDJ01000012
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
324904
324815
-
Ser
CGA
[ENA]
¡û
>W1610724436
LMEC01000026
Betaproteobacteria
Massilia sp. Root418 [LMEC]
311787
311698
-
Ser
CGA
[ENA]
¡û
>W1610724437
LMEC01000026
Betaproteobacteria
Massilia sp. Root418 [LMEC]
311666
311577
-
Ser
CGA
[ENA]
¡û
>W1611063345
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
343265
343176
-
Ser
CGA
[ENA]
¡û
>W1710074020
BCYO01000006
Betaproteobacteria
Polaromonas jejuensis NBRC 106434 [BCYO]
8053
7964
-
Ser
CGA
[ENA]
¡û
>W1710511895
FMYZ01000002
Betaproteobacteria
Cupriavidus sp. YR651 [FMYZ]
635555
635644
+
Ser
CGA
[ENA]
¡û
>W1710515853
FNCD01000004
Betaproteobacteria
Duganella sp. OV458 [FNCD]
29634
29723
+
Ser
CGA
[ENA]
¡û
>W1710515854
FNCD01000004
Betaproteobacteria
Duganella sp. OV458 [FNCD]
29764
29853
+
Ser
CGA
[ENA]
¡û
>W1710519303
FNEQ01000005
Betaproteobacteria
Duganella sp. OV510 [FNEQ]
430761
430672
-
Ser
CGA
[ENA]
¡û
>W1710519304
FNEQ01000005
Betaproteobacteria
Duganella sp. OV510 [FNEQ]
430631
430542
-
Ser
CGA
[ENA]
¡û
>W1710545116
FOBG01000001
Betaproteobacteria
Duganella sp. CF402 [FOBG]
277284
277373
+
Ser
CGA
[ENA]
¡û
>W1710545117
FOBG01000001
Betaproteobacteria
Duganella sp. CF402 [FOBG]
277414
277503
+
Ser
CGA
[ENA]
¡û
>W1710557414
FOKZ01000020
Betaproteobacteria
Polaromonas sp. OV174 [FOKZ]
52596
52685
+
Ser
CGA
[ENA]
¡û
>W1710595722
FTMD01000003
Betaproteobacteria
Aromatoleum tolulyticum tolulyticus [FTMD]
239655
239566
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK