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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.312832 (15 seq.)
>WENV180297210
OBJA01014900
[OBJA] soil metagenome; sediment, water from around vicinity
811
736
-
Thr
TGT
[ENA]
¢þ
>WENV181414008
OGCK01194696
[OGCK] hot springs metagenome; hot spring sediment
149
74
-
Thr
TGT
[ENA]
¢þ
>WENV183513546
OMKS01005847
[OMKS] sediment metagenome; hot spring sediment
4508
4583
+
Thr
TGT
[ENA]
¢þ
>WENV183516332
OMKS01160875
[OMKS] sediment metagenome; hot spring sediment
623
548
-
Thr
TGT
[ENA]
¢þ
>WENV170779635
LZQQ01000587
[LZQQ] oil field metagenome; sample BH-FW-20 from oil reservoir
3381
3306
-
Thr
TGT
[ENA]
¢þ
>C191011644
CP014470
Gammaproteobacteria
Thiomicrospira sp. S5 [CP014470]
536065
536140
+
Thr
TGT
-
¡û
>C191011648
CP014470
Gammaproteobacteria
Thiomicrospira sp. S5 [CP014470]
755714
755789
+
Thr
TGT
-
¡û
>C191084390
CP032096
Gammaproteobacteria
Hydrogenovibrio crunogenus SP-41 [CP032096]
2149726
2149651
-
Thr
TGT
-
¡û
>C191134045
CP035033
Gammaproteobacteria
Hydrogenovibrio thermophilus JR-2 [CP035033]
2288463
2288388
-
Thr
TGT
-
¡û
>C191180163
CP040602
Gammaproteobacteria
Thiomicrorhabdus sediminis G1 [CP040602]
2178415
2178340
-
Thr
TGT
-
¡û
>W141700063
JMIU01000001
Gammaproteobacteria
Hydrogenovibrio marinus [JMIU]
979325
979250
-
Thr
TGT
[ENA]
¡û
>W141776948
JOMK01000001
Gammaproteobacteria
Hydrogenovibrio sp. MA2-6 MA2-6 [JOMK]
1508226
1508151
-
Thr
TGT
[ENA]
¡û
>W141777001
JOML01000002
Gammaproteobacteria
Hydrogenovibrio marinus DSM 11271 [JOML]
1337126
1337051
-
Thr
TGT
[ENA]
¡û
>C11122516
CP002776
Gammaproteobacteria
Thiomicrospira cyclica ALM1 [CP002776]
268169
268244
+
Thr
TGT
[Ensembl]
¡û
>W1710575186
FOYY01000004
Gammaproteobacteria
Thiomicrospira sp. ALE5 ALE5 [FOYY]
406815
406740
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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