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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.313235 (47 seq.)
>W1710860748
LMDC01000028
Betaproteobacteria
Pelomonas sp. Root1217 [LMDC]
249649
249574
-
Glu
TTC
[ENA]
¡û
>W1710860751
LMDC01000028
Betaproteobacteria
Pelomonas sp. Root1217 [LMDC]
249177
249102
-
Glu
TTC
[ENA]
¡û
>W1710861010
LMDI01000014
Betaproteobacteria
Rhizobacter sp. Root1221 [LMDI]
5097
5022
-
Glu
TTC
[ENA]
¡û
>W1710861565
LMDS01000004
Betaproteobacteria
Rhizobacter sp. Root404 [LMDS]
158566
158491
-
Glu
TTC
[ENA]
¡û
>W1710861685
LMDU01000014
Betaproteobacteria
Pelomonas sp. Root405 [LMDU]
765951
765876
-
Glu
TTC
[ENA]
¡û
>W1710861687
LMDU01000014
Betaproteobacteria
Pelomonas sp. Root405 [LMDU]
765676
765601
-
Glu
TTC
[ENA]
¡û
>W1710866071
LMHE01000013
Betaproteobacteria
Pelomonas sp. Root662 [LMHE]
911046
910971
-
Glu
TTC
[ENA]
¡û
>W1710866073
LMHE01000013
Betaproteobacteria
Pelomonas sp. Root662 [LMHE]
910771
910696
-
Glu
TTC
[ENA]
¡û
>W1712102983
NIOF01000018
Betaproteobacteria
Roseateles aquatilis [NIOF]
66154
66229
+
Glu
TTC
[ENA]
¡û
>W1712102986
NIOF01000018
Betaproteobacteria
Roseateles aquatilis [NIOF]
66663
66738
+
Glu
TTC
[ENA]
¡û
>W1712105717
NISI01000001
Betaproteobacteria
Roseateles puraquae [NISI]
405010
404935
-
Glu
TTC
[ENA]
¡û
>W1712105720
NISI01000001
Betaproteobacteria
Roseateles puraquae [NISI]
404611
404536
-
Glu
TTC
[ENA]
¡û
>C013940
CP000555
Betaproteobacteria
Methylibium petroleiphilum PM1 [CP000555]
2304019
2303944
-
Glu
TTC
[Ensembl]
¡û
>WENV180268335
OBEQ011955981
[OBEQ] groundwater metagenome; groundwater
10801
10876
+
Glu
TTC
[ENA]
¢þ
>WENV180558202
OCJY01011870
[OCJY] human gut metagenome; human gut
560
485
-
Glu
TTC
[ENA]
¢þ
>WENV181187900
OEOE01001629
[OEOE] activated sludge metagenome; Activated Sludge
2219
2294
+
Glu
TTC
[ENA]
¢þ
>WENV181368083
OFQH01000048
[OFQH] freshwater metagenome; Freshwater Lake
141
66
-
Glu
TTC
[ENA]
¢þ
>W141214257
AZSN01000105
Betaproteobacteria
Methylibium sp. T29-B [AZSN]
12828
12903
+
Glu
TTC
[ENA]
¡û
>WENV170551272
CXWJ01002677
[CXWJ] wastewater metagenome; activated sludge
110
185
+
Glu
TTC
[ENA]
¢þ
>WENV170551300
CXWJ01003371
[CXWJ] wastewater metagenome; activated sludge
6770
6845
+
Glu
TTC
[ENA]
¢þ
>WENV170551336
CXWJ01004772
[CXWJ] wastewater metagenome; activated sludge
6361
6436
+
Glu
TTC
[ENA]
¢þ
>WENV170552831
CXWK01002523
[CXWK] wastewater metagenome; activated sludge
314
239
-
Glu
TTC
[ENA]
¢þ
>WENV170634595
FZPR01000236
[FZPR] metagenome; sediment
731
656
-
Glu
TTC
[ENA]
¢þ
>WENV170651330
JRYF01007142
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
1988
2063
+
Glu
TTC
[ENA]
¢þ
>C181176209
CP029210
Betaproteobacteria
Aquabacterium olei NBRC 110486 [CP029210]
2709178
2709103
-
Glu
TTC
-
¡û
>C181176212
CP029210
Betaproteobacteria
Aquabacterium olei NBRC 110486 [CP029210]
2708720
2708645
-
Glu
TTC
-
¡û
>W09101361
AAEM01000001
Betaproteobacteria
Methylibium petroleiphilum PM1 [AAEM]
538151
538226
+
Glu
TTC
[ENA]
¡û
>W1910175599
BJCL01000005
Betaproteobacteria
Rubrivivax pictus W35 [BJCL]
12962
13037
+
Glu
TTC
[ENA]
¡û
>W1910700332
MESK01000056
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_99 [MESK]
54407
54332
-
Glu
TTC
[ENA]
¡û
>W1910700335
MESK01000056
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_99 [MESK]
53951
53876
-
Glu
TTC
[ENA]
¡û
>W1910700338
MESK01000056
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_99 [MESK]
53481
53406
-
Glu
TTC
[ENA]
¡û
>W1911766103
QXDH01000005
Betaproteobacteria
Pelomonas sp. BT06 [QXDH]
339644
339719
+
Glu
TTC
[ENA]
¡û
>W1911766106
QXDH01000005
Betaproteobacteria
Pelomonas sp. BT06 [QXDH]
340068
340143
+
Glu
TTC
[ENA]
¡û
>W1810475722
QAJF01000097
Betaproteobacteria
Pelomonas sp. HMWF004 [QAJF]
2264
2339
+
Glu
TTC
[ENA]
¡û
>W1510021358
BBYR01000037
Betaproteobacteria
Piscinibacter sakaiensis 201-F6 [BBYR]
12904
12829
-
Glu
TTC
[ENA]
¡û
>W1511433125
JUGZ01000003
Betaproteobacteria
Methylibium sp. CF468 [JUGZ]
39242
39317
+
Glu
TTC
[ENA]
¡û
>W1511552096
JZUE01000003
Betaproteobacteria
Aquincola tertiaricarbonis MIMtkpLc11 [JZUE]
207970
208045
+
Glu
TTC
[ENA]
¡û
>C161059574
CP013692
Betaproteobacteria
Paucibacter sp. KCTC 42545 [CP013692]
2042568
2042493
-
Glu
TTC
[Ensembl]
¡û
>C161059577
CP013692
Betaproteobacteria
Paucibacter sp. KCTC 42545 [CP013692]
2042018
2041943
-
Glu
TTC
[Ensembl]
¡û
>W1610723094
LMDC01000028
Betaproteobacteria
Pelomonas sp. Root1217 [LMDC]
249649
249574
-
Glu
TTC
[ENA]
¡û
>W1610723097
LMDC01000028
Betaproteobacteria
Pelomonas sp. Root1217 [LMDC]
249177
249102
-
Glu
TTC
[ENA]
¡û
>W1610723356
LMDI01000014
Betaproteobacteria
Rhizobacter sp. Root1221 [LMDI]
5097
5022
-
Glu
TTC
[ENA]
¡û
>W1610723911
LMDS01000004
Betaproteobacteria
Rhizobacter sp. Root404 [LMDS]
158566
158491
-
Glu
TTC
[ENA]
¡û
>W1610724031
LMDU01000014
Betaproteobacteria
Pelomonas sp. Root405 [LMDU]
765951
765876
-
Glu
TTC
[ENA]
¡û
>W1610724033
LMDU01000014
Betaproteobacteria
Pelomonas sp. Root405 [LMDU]
765676
765601
-
Glu
TTC
[ENA]
¡û
>W1610728417
LMHE01000013
Betaproteobacteria
Pelomonas sp. Root662 [LMHE]
911046
910971
-
Glu
TTC
[ENA]
¡û
>W1610728419
LMHE01000013
Betaproteobacteria
Pelomonas sp. Root662 [LMHE]
910771
910696
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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