This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.313750 (110 seq.)
>W1710861007
LMDI01000013
Betaproteobacteria
Rhizobacter sp. Root1221 [LMDI]
108115
108190
+
Val
TAC
[ENA]
¡û
>W1710861582
LMDS01000005
Betaproteobacteria
Rhizobacter sp. Root404 [LMDS]
911437
911362
-
Val
TAC
[ENA]
¡û
>W1710862472
LMEK01000006
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
354076
354151
+
Val
TAC
[ENA]
¡û
>W1710863096
LMEV01000019
Betaproteobacteria
Variovorax sp. Root473 [LMEV]
137670
137745
+
Val
TAC
[ENA]
¡û
>W1710882940
LMVF01000023
Betaproteobacteria
Cupriavidus necator [LMVF]
154482
154407
-
Val
TAC
[ENA]
¡û
>W1711259815
LYVO01000013
Betaproteobacteria
Variovorax sp. KK3 [LYVO]
83772
83697
-
Val
TAC
[ENA]
¡û
>W1711307442
MAOS01000051
Betaproteobacteria
Pandoraea sp. ISTKB [MAOS]
56807
56882
+
Val
TAC
[ENA]
¡û
>W1711386500
MEFM01000021
Betaproteobacteria
Variovorax sp. SCN 67-85 [MEFM]
193832
193757
-
Val
TAC
[ENA]
¡û
>W1711503031
MKTG01000010
Betaproteobacteria
Burkholderiales bacterium 68-10 [MKTG]
13207
13132
-
Val
TAC
[ENA]
¡û
>W1711505730
MKVU01000006
Betaproteobacteria
Pandoraea sp. 64-18 [MKVU]
3446
3371
-
Val
TAC
[ENA]
¡û
>W1712077137
NGUQ01000037
Betaproteobacteria
Pandoraea sp. PE-S2T-3 [NGUQ]
211398
211473
+
Val
TAC
[ENA]
¡û
>C171007365
CP010518
Betaproteobacteria
Pandoraea apista TF81F4 [CP010518]
4828262
4828187
-
Val
TAC
-
¡û
>C171103272
CP020046
Betaproteobacteria
Thiomonas intermedia ATCC 15466 [CP020046]
191268
191193
-
Val
TAC
-
¡û
>W131156625
AQPZ01000012
Betaproteobacteria
Cupriavidus sp. GA3-3 GA3-3 [AQPZ]
99871
99796
-
Val
TAC
[ENA]
¡û
>W131178104
ARLH01000090
Betaproteobacteria
Caldimonas manganoxidans ATCC BAA-369 [ARLH]
181013
181088
+
Val
TAC
[ENA]
¡û
>W131236682
AUMO01000016
Betaproteobacteria
Azohydromonas australica DSM 1124 [AUMO]
263429
263504
+
Val
TAC
[ENA]
¡û
>W131066627
ANOY01000221
Betaproteobacteria
Pseudacidovorax intermedius NH-1 [ANOY]
2334
2259
-
Val
TAC
[ENA]
¡û
>W131164920
ARBE01000345
Betaproteobacteria
Cupriavidus sp. UYPR2.512 [ARBE]
70399
70474
+
Val
TAC
[ENA]
¡û
>WENV180026950
FTIV01008109
[FTIV] metagenome; soil
566
641
+
Val
TAC
[ENA]
¢þ
>WENV180271977
OBEQ012335567
[OBEQ] groundwater metagenome; groundwater
562
487
-
Val
TAC
[ENA]
¢þ
>WENV180311305
OBJT01215029
[OBJT] soil metagenome; soil
126
51
-
Val
TAC
[ENA]
¢þ
>WENV180731652
ODGW01004816
[ODGW] human metagenome; G_DNA_Supragingival plaque
651
576
-
Val
TAC
[ENA]
¢þ
>WENV180814834
ODJO01070006
[ODJO] human metagenome; G_DNA_Supragingival plaque
353
428
+
Val
TAC
[ENA]
¢þ
>WENV180835687
ODKE01008455
[ODKE] human metagenome; G_DNA_Supragingival plaque
2300
2375
+
Val
TAC
[ENA]
¢þ
>WENV180981816
ODVE01067043
[ODVE] human metagenome; G_DNA_Supragingival plaque
36
111
+
Val
TAC
[ENA]
¢þ
>WENV180983415
ODVF01010744
[ODVF] human metagenome; G_DNA_Supragingival plaque
1445
1520
+
Val
TAC
[ENA]
¢þ
>WENV181049663
ODYD01001200
[ODYD] human metagenome; G_DNA_Supragingival plaque
1643
1718
+
Val
TAC
[ENA]
¢þ
>WENV181227705
OFDN01031527
[OFDN] hot springs metagenome; Water
597
522
-
Val
TAC
[ENA]
¢þ
>WENV181304854
OFID01002545
[OFID] marine metagenome; sea ice
696
621
-
Val
TAC
[ENA]
¢þ
>WENV181384178
OFRH01030588
[OFRH] wastewater metagenome; Exp Tend NO 100WW
508
433
-
Val
TAC
[ENA]
¢þ
>WENV181837944
OGVL01024093
[OGVL] freshwater metagenome; freshwater
150
75
-
Val
TAC
[ENA]
¢þ
>WENV181847723
OGVY01058000
[OGVY] freshwater metagenome; freshwater
325
400
+
Val
TAC
[ENA]
¢þ
>W141194250
AYSW01000070
Betaproteobacteria
Robbsia andropogonis Ba3549 [AYSW]
64819
64744
-
Val
TAC
[ENA]
¡û
>W141223648
BADL01000283
Betaproteobacteria
Ideonella sp. B508-1 [BADL]
3777
3702
-
Val
TAC
[ENA]
¡û
>WENV183736291
PJUC01000426
[PJUC] soil metagenome; Soil enriched on filter paper
17061
16986
-
Val
TAC
[ENA]
¢þ
>WENV183740625
PJUF01004607
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1797
1722
-
Val
TAC
[ENA]
¢þ
>WENV183741953
PJUH01000015
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
197874
197799
-
Val
TAC
[ENA]
¢þ
>WENV183750490
PPFU01311220
[PPFU] hypolithon metagenome; Antarctic Hypolithon
12121
12196
+
Val
TAC
[ENA]
¢þ
>WENV170559085
CXWL01109628
[CXWL] groundwater metagenome; biofilm material
4859
4784
-
Val
TAC
[ENA]
¢þ
>WENV170559284
CXWL01117726
[CXWL] groundwater metagenome; biofilm material
2683
2758
+
Val
TAC
[ENA]
¢þ
>WENV170634606
FZPR01000581
[FZPR] metagenome; sediment
614
689
+
Val
TAC
[ENA]
¢þ
>WENV170653450
JRYJ01001170
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
4093
4018
-
Val
TAC
[ENA]
¢þ
>W141463917
JFJV02000240
Betaproteobacteria
Cupriavidus sp. SK-3 [JFJV]
43750
43675
-
Val
TAC
[ENA]
¡û
>WENV170961624
MLJW01000251
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
14049
13974
-
Val
TAC
[ENA]
¢þ
>WENV170961626
MLJW01000253
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
5131
5206
+
Val
TAC
[ENA]
¢þ
>C181008397
CP010518
Betaproteobacteria
Pandoraea apista TF81F4 [CP010518]
1433348
1433273
-
Val
TAC
-
¡û
>C181064558
CP022423
Betaproteobacteria
Vitreoscilla filiformis ATCC 15551 [CP022423]
2486601
2486526
-
Val
TAC
-
¡û
>C181176194
CP029210
Betaproteobacteria
Aquabacterium olei NBRC 110486 [CP029210]
1512874
1512949
+
Val
TAC
-
¡û
>C181224160
LT906435
Betaproteobacteria
Pandoraea sputorum NCTC13161 [LT906435]
2337416
2337491
+
Val
TAC
-
¡û
>W1910175601
BJCL01000005
Betaproteobacteria
Rubrivivax pictus W35 [BJCL]
190478
190553
+
Val
TAC
[ENA]
¡û
>W1910207457
FLMQ01000056
Betaproteobacteria
Thiomonas delicata DSM 16361 [FLMQ]
388056
388131
+
Val
TAC
[ENA]
¡û
>W1910211082
FMBP01000005
Betaproteobacteria
Thiomonas sp. X19 [FMBP]
191958
192033
+
Val
TAC
[ENA]
¡û
>W1910700351
MESK01000110
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_99 [MESK]
271352
271427
+
Val
TAC
[ENA]
¡û
>W1910792851
MRCN01000035
Betaproteobacteria
Variovorax boronicumulans ACN3 [MRCN]
14129
14054
-
Val
TAC
[ENA]
¡û
>W1910810185
MUHY01000001
Betaproteobacteria
Candidatus Pandoraea novymonadis novymonadis E262 [MUHY]
605236
605311
+
Val
TAC
[ENA]
¡û
>W1911398058
NWMV01000032
Betaproteobacteria
Macromonas nakdongensis BK-30 [NWMV]
22753
22828
+
Val
TAC
[ENA]
¡û
>W1911496686
OCMW01000001
Betaproteobacteria
Variovorax sp. YR752 [OCMW]
2784724
2784799
+
Val
TAC
[ENA]
¡û
>W1911518112
OFSN01000001
Betaproteobacteria
Cupriavidus taiwanensis [OFSN]
1647428
1647503
+
Val
TAC
[ENA]
¡û
>W1911518219
OFSP01000004
Betaproteobacteria
Cupriavidus taiwanensis [OFSP]
311449
311524
+
Val
TAC
[ENA]
¡û
>W1911518424
OFSS01000020
Betaproteobacteria
Cupriavidus taiwanensis [OFSS]
335719
335794
+
Val
TAC
[ENA]
¡û
>W1911518502
OFSU01000004
Betaproteobacteria
Cupriavidus taiwanensis [OFSU]
60660
60735
+
Val
TAC
[ENA]
¡û
>W1911518599
OFSV01000017
Betaproteobacteria
Cupriavidus taiwanensis [OFSV]
61203
61278
+
Val
TAC
[ENA]
¡û
>W1911518627
OFSX01000007
Betaproteobacteria
Cupriavidus taiwanensis [OFSX]
61360
61435
+
Val
TAC
[ENA]
¡û
>W1911518741
OFSZ01000015
Betaproteobacteria
Cupriavidus taiwanensis [OFSZ]
483264
483339
+
Val
TAC
[ENA]
¡û
>W1911518870
OFTB01000034
Betaproteobacteria
Cupriavidus taiwanensis [OFTB]
61119
61194
+
Val
TAC
[ENA]
¡û
>W1911518987
OFTE01000003
Betaproteobacteria
Cupriavidus taiwanensis [OFTE]
60660
60735
+
Val
TAC
[ENA]
¡û
>W1911519055
OFTF01000007
Betaproteobacteria
Cupriavidus taiwanensis [OFTF]
30952
31027
+
Val
TAC
[ENA]
¡û
>W1911519109
OFTG01000008
Betaproteobacteria
Cupriavidus taiwanensis [OFTG]
30951
31026
+
Val
TAC
[ENA]
¡û
>W1911519417
OFTL01000023
Betaproteobacteria
Cupriavidus taiwanensis [OFTL]
482280
482355
+
Val
TAC
[ENA]
¡û
>W1911519556
OFTO01000011
Betaproteobacteria
Cupriavidus taiwanensis [OFTO]
656462
656537
+
Val
TAC
[ENA]
¡û
>W1911519605
OFTP01000005
Betaproteobacteria
Cupriavidus taiwanensis [OFTP]
61221
61296
+
Val
TAC
[ENA]
¡û
>W1911775323
QXMN01000024
Betaproteobacteria
Acidovorax cavernicola 1011MAR4D40.2 [QXMN]
87675
87750
+
Val
TAC
[ENA]
¡û
>W1810017337
BGPQ01000014
Betaproteobacteria
Cupriavidus sp. P-10 [BGPQ]
101502
101427
-
Val
TAC
[ENA]
¡û
>W1810177564
PJRP01000021
Betaproteobacteria
Cupriavidus pauculus UM1 [PJRP]
76159
76234
+
Val
TAC
[ENA]
¡û
>W1810192726
PKMT01000004
Betaproteobacteria
Variovorax sp. RO1 [PKMT]
347251
347326
+
Val
TAC
[ENA]
¡û
>W1810268940
PRDW01000007
Betaproteobacteria
Mycetohabitans endofungorum HKI456 [PRDW]
121148
121223
+
Val
TAC
[ENA]
¡û
>W1810573264
QEKP01000019
Betaproteobacteria
Cupriavidus alkaliphilus CAG-122 [QEKP]
59935
60010
+
Val
TAC
[ENA]
¡û
>W1810759920
QPJU01000001
Betaproteobacteria
Extensimonas vulgaris DSM 100911 [QPJU]
139451
139376
-
Val
TAC
[ENA]
¡û
>W1810763109
QQAV01000006
Betaproteobacteria
Pseudacidovorax intermedius DSM 21352 [QQAV]
50108
50183
+
Val
TAC
[ENA]
¡û
>W1810861216
QTTS01000001
Betaproteobacteria
Cupriavidus plantarum MA1-2za [QTTS]
1003757
1003682
-
Val
TAC
[ENA]
¡û
>C151078580
CP011253
Betaproteobacteria
Pandoraea oxalativorans DSM 23570 [CP011253]
4966436
4966361
-
Val
TAC
[Ensembl]
¡û
>C151086808
CP011807
Betaproteobacteria
Pandoraea faecigallinarum DSM 23572 [CP011807]
198045
197970
-
Val
TAC
[Ensembl]
¡û
>W1510015034
BBQM01000016
Betaproteobacteria
Cupriavidus basilensis KF708 [BBQM]
62786
62861
+
Val
TAC
[ENA]
¡û
>W1510100669
CEWL01000031
Betaproteobacteria
Pandoraea apista LMG16407 [CEWL]
250765
250690
-
Val
TAC
[ENA]
¡û
>C11103925
FR687359
Betaproteobacteria
Mycetohabitans rhizoxinica HKI 454 [FR687359]
1529322
1529247
-
Val
TAC
[Ensembl]
¡û
>W1511433169
JUGZ01000051
Betaproteobacteria
Methylibium sp. CF468 [JUGZ]
15667
15742
+
Val
TAC
[ENA]
¡û
>W1511508922
JXQQ01000020
Betaproteobacteria
Variovorax paradoxus MEDvA23 [JXQQ]
25985
25910
-
Val
TAC
[ENA]
¡û
>W1511534655
JYOD01000029
Betaproteobacteria
Burkholderiaceae bacterium 16 [JYOD]
52170
52095
-
Val
TAC
[ENA]
¡û
>W1511577566
LAQU01000012
Betaproteobacteria
Robbsia andropogonis ICMP2807 [LAQU]
24171
24096
-
Val
TAC
[ENA]
¡û
>C161056198
CP013480
Betaproteobacteria
Pandoraea norimbergensis DSM 11628 [CP013480]
4132181
4132256
+
Val
TAC
-
¡û
>C161056295
CP013481
Betaproteobacteria
Pandoraea apista DSM 16535 [CP013481]
1210635
1210560
-
Val
TAC
-
¡û
>W121102765
AKXR01001398
Betaproteobacteria
Cupriavidus basilensis B-8 [AKXR]
7152
7227
+
Val
TAC
[ENA]
¡û
>W121102825
AKXS01000168
Betaproteobacteria
Pandoraea sp. B-6 [AKXS]
5719
5644
-
Val
TAC
[ENA]
¡û
>W121113665
ALOU01000019
Betaproteobacteria
Cupriavidus sp. BIS7 [ALOU]
297115
297190
+
Val
TAC
[ENA]
¡û
>W1610070257
BCTC01000058
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
15404
15329
-
Val
TAC
[ENA]
¡û
>W1610074132
BCWK01000009
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
54179
54104
-
Val
TAC
[ENA]
¡û
>W1610085452
CTRJ01000042
Betaproteobacteria
Thiomonas arsenitoxydans CB6 [CTRJ]
392005
391930
-
Val
TAC
[ENA]
¡û
>W1610085542
CTRM01000003
Betaproteobacteria
Thiomonas sp. CB3 [CTRM]
373767
373842
+
Val
TAC
[ENA]
¡û
>W1610723353
LMDI01000013
Betaproteobacteria
Rhizobacter sp. Root1221 [LMDI]
108115
108190
+
Val
TAC
[ENA]
¡û
>W1610723928
LMDS01000005
Betaproteobacteria
Rhizobacter sp. Root404 [LMDS]
911437
911362
-
Val
TAC
[ENA]
¡û
>W1610724818
LMEK01000006
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
354076
354151
+
Val
TAC
[ENA]
¡û
>W1610725442
LMEV01000019
Betaproteobacteria
Variovorax sp. Root473 [LMEV]
137670
137745
+
Val
TAC
[ENA]
¡û
>W1610744866
LMVF01000023
Betaproteobacteria
Cupriavidus necator [LMVF]
154482
154407
-
Val
TAC
[ENA]
¡û
>W1710067630
BCTC01000058
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
15404
15329
-
Val
TAC
[ENA]
¡û
>W1710071250
BCWK01000009
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
54179
54104
-
Val
TAC
[ENA]
¡û
>W1710090041
CTRJ01000042
Betaproteobacteria
Thiomonas arsenitoxydans CB6 [CTRJ]
392005
391930
-
Val
TAC
[ENA]
¡û
>W1710090131
CTRM01000003
Betaproteobacteria
Thiomonas sp. CB3 [CTRM]
373767
373842
+
Val
TAC
[ENA]
¡û
>W1710539557
FNVM01000007
Betaproteobacteria
Variovorax sp. NFACC29 [FNVM]
196766
196841
+
Val
TAC
[ENA]
¡û
>W1710562249
FOOV01000004
Betaproteobacteria
Variovorax sp. NFACC27 [FOOV]
273725
273650
-
Val
TAC
[ENA]
¡û
>W1710599735
FTPJ01000003
Betaproteobacteria
Burkholderia sp. b14 [FTPJ]
518519
518444
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK