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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.314528 (33 seq.)
>W1711144356
LVIB01000027
Gammaproteobacteria
Acinetobacter johnsonii [LVIB]
8804
8729
-
Arg
CCT
[ENA]
¡û
>W1711269243
LZDS01000007
Gammaproteobacteria
Acinetobacter gandensis [LZDS]
21250
21325
+
Arg
CCT
[ENA]
¡û
>W1711314137
MAUF01000023
Gammaproteobacteria
Acinetobacter defluvii WCHA30 [MAUF]
40767
40842
+
Arg
CCT
[ENA]
¡û
>W1711777041
MVKX01000004
Gammaproteobacteria
Acinetobacter amyesii ANC 4945 [MVKX]
160468
160543
+
Arg
CCT
[ENA]
¡û
>W1711783865
MVON01000024
Gammaproteobacteria
Acinetobacter sp. MF4642 [MVON]
40313
40388
+
Arg
CCT
[ENA]
¡û
>W1712003694
NEGI01000006
Gammaproteobacteria
Acinetobacter sp. ANC 4648 [NEGI]
67536
67611
+
Arg
CCT
[ENA]
¡û
>W1712084462
NHRN01000016
Gammaproteobacteria
Acinetobacter sp. WCHA55 [NHRN]
35221
35146
-
Arg
CCT
[ENA]
¡û
>W131042172
AMJE01000101
Gammaproteobacteria
Acinetobacter johnsonii TG19625 [AMJE]
55023
55098
+
Arg
CCT
[ENA]
¡û
>WENV180013383
FMSI01076190
[FMSI] soil metagenome; Soil
338
413
+
Arg
CCT
[ENA]
¢þ
>WENV180013914
FPIC01009850
[FPIC] soil metagenome; Soil
76
1
-
Arg
CCT
[ENA]
¢þ
>WENV181193706
OEQO01000027
[OEQO] metagenome; water of meat washing
8856
8781
-
Arg
CCT
[ENA]
¢þ
>WENV181196293
OEQX01000122
[OEQX] metagenome; water of meat washing
424
349
-
Arg
CCT
[ENA]
¢þ
>WENV181198112
OERD01000108
[OERD] metagenome; water of meat washing
263
188
-
Arg
CCT
[ENA]
¢þ
>WENV181200957
OERM01000051
[OERM] metagenome; water of meat washing
38727
38802
+
Arg
CCT
[ENA]
¢þ
>WENV181201582
OERO01007112
[OERO] metagenome; water of meat washing
108
33
-
Arg
CCT
[ENA]
¢þ
>WENV181837007
OGVK01000311
[OGVK] freshwater metagenome; freshwater
2105
2178
+
Arg
CCT
[ENA]
¢þ
>PL191001334
CP035936
Gammaproteobacteria
Acinetobacter sp. WCHAc060092 plasmid:p1_060092 (CP035936)
89991
90066
+
Arg
CCT
[ENA]
¡û
>C181178062
CP029397
Gammaproteobacteria
Acinetobacter defluvii WCHA30 [CP029397]
1011017
1010944
-
Arg
CCT
-
¡û
>C191020007
CP022298
Gammaproteobacteria
Acinetobacter johnsonii IC001 [CP022298]
959039
958964
-
Arg
CCT
-
¡û
>C191101097
CP033133
Gammaproteobacteria
Acinetobacter wuhouensis WCHAW010062 [CP033133]
971914
971839
-
Arg
CCT
-
¡û
>C191152996
CP037424
Gammaproteobacteria
Acinetobacter johnsonii M19 [CP037424]
1010244
1010169
-
Arg
CCT
-
¡û
>W141562654
JHZI01000011
Gammaproteobacteria
Acinetobacter baylyi DSM 14961 = CIP 107474 [JHZI]
42908
42834
-
Arg
CCT
[ENA]
¡û
>W1910399295
FUUY01000001
Gammaproteobacteria
Acinetobacter johnsonii [FUUY]
14944
14869
-
Arg
CCT
[ENA]
¡û
>W1910550809
FZRG01000010
Gammaproteobacteria
Acinetobacter johnsonii [FZRG]
5259
5184
-
Arg
CCT
[ENA]
¡û
>W1910599095
LBNL01000014
Gammaproteobacteria
Acinetobacter tandoii SC36 [LBNL]
49757
49684
-
Arg
CCT
[ENA]
¡û
>W1910637783
LQXQ01000020
Gammaproteobacteria
Acinetobacter sp. CFCC 10889 [LQXQ]
45969
46044
+
Arg
CCT
[ENA]
¡û
>W1910743815
MHZL01000122
Gammaproteobacteria
Pseudomonadales bacterium RIFCSPHIGHO2_12_FULL_40_16 [MHZL]
78080
78155
+
Arg
CCT
[ENA]
¡û
>W1810403141
PYIW01000004
Gammaproteobacteria
Acinetobacter cumulans WCHAc060092 [PYIW]
27691
27616
-
Arg
CCT
[ENA]
¡û
>W1810893967
QUWR01000001
Gammaproteobacteria
Acinetobacter sp. SWAC5 [QUWR]
210358
210283
-
Arg
CCT
[ENA]
¡û
>W11171959
AFQY01000003
Gammaproteobacteria
Acinetobacter lwoffii WJ10621 [AFQY]
218992
218917
-
Arg
CCT
[ENA]
¡û
>C161083296
CP015110
Gammaproteobacteria
Acinetobacter sp. TGL-Y2 [CP015110]
2485514
2485588
+
Arg
CCT
[Ensembl]
¡û
>W1610955364
LVIB01000027
Gammaproteobacteria
Acinetobacter johnsonii [LVIB]
8804
8729
-
Arg
CCT
[ENA]
¡û
>W1611030055
LZDS01000007
Gammaproteobacteria
Acinetobacter gandensis [LZDS]
21250
21325
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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