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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.314878 (59 seq.)
>W131108949
APGP01000053
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
48622
48547
-
Phe
GAA
[ENA]
¡û
>W131218329
ATXO01000022
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
15379
15454
+
Phe
GAA
[ENA]
¡û
>C006897
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
1020600
1020675
+
Phe
GAA
[Ensembl]
¡û
>WENV181026924
ODXC01026815
[ODXC] human metagenome; G_DNA_Stool
161
236
+
Phe
GAA
[ENA]
¢þ
>WENV181226081
OFDK01000020
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
69273
69198
-
Phe
GAA
[ENA]
¢þ
>WENV181285479
OFGS01000862
[OFGS] hot springs metagenome; Water and soil
1065
1140
+
Phe
GAA
[ENA]
¢þ
>WENV181285502
OFGS01001181
[OFGS] hot springs metagenome; Water and soil
2034
1959
-
Phe
GAA
[ENA]
¢þ
>WENV181411906
OGCI01057911
[OGCI] hot springs metagenome; Hot spring water
800
875
+
Phe
GAA
[ENA]
¢þ
>WENV182396387
OIEL01060758
[OIEL] human gut metagenome; human gut
112
187
+
Phe
GAA
[ENA]
¢þ
>C08005392
CP000930
Bacillota
Heliomicrobium modesticaldum Ice1 Ice1; ATCC 51547 [CP000930]
1764008
1764083
+
Phe
GAA
[Ensembl]
¡û
>C08005407
CP000930
Bacillota
Heliomicrobium modesticaldum Ice1 Ice1; ATCC 51547 [CP000930]
2286371
2286446
+
Phe
GAA
[Ensembl]
¡û
>C08005429
CP000930
Bacillota
Heliomicrobium modesticaldum Ice1 Ice1; ATCC 51547 [CP000930]
2555172
2555247
+
Phe
GAA
[Ensembl]
¡û
>WENV183759812
PPYE01212502
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
3611
3536
-
Phe
GAA
[ENA]
¢þ
>WENV170563497
CZCB01020089
[CZCB] anaerobic digester metagenome; anaerobic digester
3100
3025
-
Phe
GAA
[ENA]
¢þ
>WENV170686879
LFRM01168614
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
10840
10915
+
Phe
GAA
[ENA]
¢þ
>WENV170688000
LFRM01220894
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
10932
10857
-
Phe
GAA
[ENA]
¢þ
>WENV170691104
LFRM01380412
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
105749
105674
-
Phe
GAA
[ENA]
¢þ
>WENV170718295
LSQX01069736
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1633
1558
-
Phe
GAA
[ENA]
¢þ
>C191131125
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
2126684
2126609
-
Phe
GAA
-
¡û
>W141558282
JHVU01000007
Bacillota
Desulfitibacter alkalitolerans DSM 16504 [JHVU]
191578
191653
+
Phe
GAA
[ENA]
¡û
>W141558297
JHVU01000012
Bacillota
Desulfitibacter alkalitolerans DSM 16504 [JHVU]
34136
34061
-
Phe
GAA
[ENA]
¡û
>W09104552
AALW01000061
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
465
390
-
Phe
GAA
[ENA]
¡û
>W1911155329
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
1026590
1026665
+
Phe
GAA
[ENA]
¡û
>W1911244067
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
572783
572858
+
Phe
GAA
[ENA]
¡û
>W1911244117
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
1125744
1125819
+
Phe
GAA
[ENA]
¡û
>W1911244194
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
1976266
1976191
-
Phe
GAA
[ENA]
¡û
>W1911244248
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
1383600
1383525
-
Phe
GAA
[ENA]
¡û
>W1911572557
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
1916060
1915985
-
Phe
GAA
[ENA]
¡û
>W1911572581
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
1821293
1821368
+
Phe
GAA
[ENA]
¡û
>W1911572652
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
2006553
2006478
-
Phe
GAA
[ENA]
¡û
>W1810052271
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
1460606
1460531
-
Phe
GAA
[ENA]
¡û
>W1810071910
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
1960531
1960456
-
Phe
GAA
[ENA]
¡û
>W1810071966
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
74467
74392
-
Phe
GAA
[ENA]
¡û
>W1810071982
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
1747337
1747412
+
Phe
GAA
[ENA]
¡û
>C10103629
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
802380
802455
+
Phe
GAA
[Ensembl]
¡û
>C11105225
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
1971094
1971019
-
Phe
GAA
[Ensembl]
¡û
>C11105391
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
2028696
2028621
-
Phe
GAA
[Ensembl]
¡û
>C11105450
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
2066554
2066479
-
Phe
GAA
[Ensembl]
¡û
>C11105464
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
462081
462156
+
Phe
GAA
[Ensembl]
¡û
>C11105848
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
696613
696688
+
Phe
GAA
[Ensembl]
¡û
>W11139384
AEKB01000006
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
14472
14547
+
Phe
GAA
[ENA]
¡û
>W1511563946
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
1046635
1046710
+
Phe
GAA
[ENA]
¡û
>W1511564016
LACN01000009
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
19837
19912
+
Phe
GAA
[ENA]
¡û
>W1511564076
LACO01000002
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
104374
104299
-
Phe
GAA
[ENA]
¡û
>W1610605708
LFSF01000020
Bacillota
Clostridiales bacterium DTU073 [LFSF]
10840
10915
+
Phe
GAA
[ENA]
¡û
>W1610606657
LFTC01000044
Bacillota
Clostridiales bacterium DTU083 [LFTC]
10932
10857
-
Phe
GAA
[ENA]
¡û
>W1610606671
LFTC01000079
Bacillota
Clostridiales bacterium DTU083 [LFTC]
105749
105674
-
Phe
GAA
[ENA]
¡û
>W1710081788
BDGJ01000126
Bacillota
Calderihabitans maritimus [BDGJ]
69623
69698
+
Phe
GAA
[ENA]
¡û
>W1710603758
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
2460011
2459936
-
Phe
GAA
[ENA]
¡û
>W1710603819
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
2918827
2918902
+
Phe
GAA
[ENA]
¡û
>W1710603897
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
946593
946668
+
Phe
GAA
[ENA]
¡û
>W1710605058
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
9230
9305
+
Phe
GAA
[ENA]
¡û
>W1710609680
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
2378654
2378579
-
Phe
GAA
[ENA]
¡û
>W1710609711
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
1083466
1083541
+
Phe
GAA
[ENA]
¡û
>W1710609749
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
1115661
1115736
+
Phe
GAA
[ENA]
¡û
>W1710609794
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
1108417
1108492
+
Phe
GAA
[ENA]
¡û
>W1710726995
LFSF01000020
Bacillota
Clostridiales bacterium DTU073 [LFSF]
10840
10915
+
Phe
GAA
[ENA]
¡û
>W1710727944
LFTC01000044
Bacillota
Clostridiales bacterium DTU083 [LFTC]
10932
10857
-
Phe
GAA
[ENA]
¡û
>W1710727958
LFTC01000079
Bacillota
Clostridiales bacterium DTU083 [LFTC]
105749
105674
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK