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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.315539 (41 seq.)
>A171001118
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
966407
966479
+
Arg
CCT
-
¡û
>A171001303
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
3246889
3246961
+
Arg
CCT
-
¡û
>A171002468
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
1892888
1892815
-
Arg
CCT
-
¡û
>A171003083
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
499730
499804
+
Arg
CCT
-
¡û
>A171003501
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
1093462
1093390
-
Arg
CCT
-
¡û
>A171004130
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
856514
856586
+
Arg
CCT
-
¡û
>A171006930
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
3867853
3867781
-
Arg
CCT
-
¡û
>A171006948
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
362914
362986
+
Arg
CCT
-
¡û
>WENV170680098
LFCJ01004050
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
2893
2966
+
Arg
CCT
[ENA]
¢þ
>WENV170681682
LFFM01002040
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
11056
11130
+
Arg
CCT
[ENA]
¢þ
>WENV170681816
LFFM01003063
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
2856
2929
+
Arg
CCT
[ENA]
¢þ
>WENV170702341
LKMJ01001402
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
18298
18225
-
Arg
CCT
[ENA]
¢þ
>WENV170704046
LKMJ01021312
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
2792
2864
+
Arg
CCT
[ENA]
¢þ
>WENV170704104
LKMJ01022633
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4899
4827
-
Arg
CCT
[ENA]
¢þ
>WENV170704181
LKMJ01024487
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3754
3826
+
Arg
CCT
[ENA]
¢þ
>W1910229309
FNWL01000001
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
718934
718862
-
Arg
CCT
[ENA]
¡û
>W1910229913
FOIC01000010
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
11136
11064
-
Arg
CCT
[ENA]
¡û
>W1910230245
FOKW01000004
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
318908
318836
-
Arg
CCT
[ENA]
¡û
>W1910230440
FORO01000008
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
74752
74678
-
Arg
CCT
[ENA]
¡û
>W1910230856
FOZS01000002
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
838361
838433
+
Arg
CCT
[ENA]
¡û
>W1910340489
FTNP01000001
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
689373
689301
-
Arg
CCT
[ENA]
¡û
>W1910340534
FTNR01000002
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
139343
139415
+
Arg
CCT
[ENA]
¡û
>W1910572562
JMIP02000014
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
79629
79557
-
Arg
CCT
[ENA]
¡û
>W1910657572
MASN01000035
Euryarchaeota
Natrialba sp. SSL1 [MASN]
313427
313355
-
Arg
CCT
[ENA]
¡û
>W1911591331
PKKI01000014
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
74646
74572
-
Arg
CCT
[ENA]
¡û
>W1610004079
AGIM01000002
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
297847
297773
-
Arg
CCT
[ENA]
¡û
>W1610011713
AOHS01000023
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
26309
26237
-
Arg
CCT
[ENA]
¡û
>W1610011961
AOHX01000039
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
215462
215534
+
Arg
CCT
[ENA]
¡û
>W1610012022
AOHZ01000017
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
43321
43249
-
Arg
CCT
[ENA]
¡û
>W1610012134
AOIB01000024
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
19571
19644
+
Arg
CCT
[ENA]
¡û
>W1610012158
AOIC01000023
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
43588
43514
-
Arg
CCT
[ENA]
¡û
>W1610012452
AOIL01000069
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
100142
100070
-
Arg
CCT
[ENA]
¡û
>W1610012516
AOIN01000060
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
43795
43867
+
Arg
CCT
[ENA]
¡û
>W1610012560
AOIO01000030
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
203033
202961
-
Arg
CCT
[ENA]
¡û
>W1610012588
AOIP01000012
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
99231
99159
-
Arg
CCT
[ENA]
¡û
>W1610012744
AOIS01000063
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
86621
86695
+
Arg
CCT
[ENA]
¡û
>W1610012771
AOIT01000021
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
45117
45045
-
Arg
CCT
[ENA]
¡û
>W1610014407
AOLZ01000022
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
276309
276381
+
Arg
CCT
[ENA]
¡û
>W1610671361
LKCV01000009
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
42326
42254
-
Arg
CCT
[ENA]
¡û
>W1610682130
LKMK01000032
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g2 [LKMK]
6895
6967
+
Arg
CCT
[ENA]
¡û
>W1610682658
LKNG01000062
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g8 [LKNG]
11056
11130
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK