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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.315566 (16 seq.)
>W1711360888
MDKA01000033
Gammaproteobacteria
Shewanella algae [MDKA]
28338
28263
-
His
GTG
[ENA]
¡û
>W1711572498
MNBX01000124
Gammaproteobacteria
Sodalis sp. TME1 [MNBX]
538
463
-
His
GTG
[ENA]
¡û
>W141227969
BALO01000018
Gammaproteobacteria
Shewanella algae JCM 21037 [BALO]
55949
55874
-
His
GTG
[ENA]
¡û
>WENV170657885
JTFP01029449
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
510
435
-
His
GTG
[ENA]
¢þ
>C181203472
LN854557
Gammaproteobacteria
Sodalis glossinidius str. 'morsitans' [LN854557]
4078594
4078519
-
His
GTG
-
¡û
>C141001562
CP003547
Gammaproteobacteria
secondary endosymbiont of Heteropsylla cubana [CP003547]
995152
995077
-
His
GTG
[Ensembl]
¡û
>W1910645065
LVDH01000001
Gammaproteobacteria
Shewanella algae AC [LVDH]
201556
201631
+
His
GTG
[ENA]
¡û
>W1910927086
NIJK01000038
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
60049
59974
-
His
GTG
[ENA]
¡û
>W1910927235
NIJM01000005
Gammaproteobacteria
Shewanella chilikensis JC5 [NIJM]
35512
35587
+
His
GTG
[ENA]
¡û
>W1810671656
QJSY01000008
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
88102
88027
-
His
GTG
[ENA]
¡û
>C151041072
CP008985
Gammaproteobacteria
Candidatus Baumannia cicadellinicola BGSS [CP008985]
223121
223046
-
His
GTG
[Ensembl]
¡û
>W1510077675
CDQH01000016
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
436525
436600
+
His
GTG
[ENA]
¡û
>W1511306474
JPMA01000001
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
31765
31690
-
His
GTG
[ENA]
¡û
>W1511477927
JWGX01000015
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
89475
89550
+
His
GTG
[ENA]
¡û
>C121014480
CP003546
Gammaproteobacteria
secondary endosymbiont of Ctenarytaina eucalypti [CP003546]
1051686
1051611
-
His
GTG
[Ensembl]
¡û
>C161108604
LN999832
Gammaproteobacteria
Candidatus Gullanella endobia [LN999832]
28332
28407
+
His
GTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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