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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.315628 (9 seq.)
>C019785
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
1504419
1504495
+
Pro
TGG
[Ensembl]
¡û
>C019813
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
3874626
3874550
-
Pro
TGG
[Ensembl]
¡û
>C019814
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
3874472
3874396
-
Pro
TGG
[Ensembl]
¡û
>WENV170022144
BCQK01000876
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
1893
1969
+
Pro
TGG
[ENA]
¢þ
>C191187159
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
26464
26388
-
Pro
TGG
-
¡û
>C191187160
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
26344
26268
-
Pro
TGG
-
¡û
>W09102770
AAIN01000001
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
525225
525301
+
Pro
TGG
[ENA]
¡û
>W09102771
AAIN01000001
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
525379
525455
+
Pro
TGG
[ENA]
¡û
>W09102790
AAIN01000011
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
1684
1608
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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