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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.315686 (37 seq.)
>W1711184354
LWMA01000012
Gammaproteobacteria
Pseudomonas putida [LWMA]
195146
195222
+
Arg
ACG
[ENA]
¡û
>W1711184355
LWMA01000012
Gammaproteobacteria
Pseudomonas putida [LWMA]
195294
195370
+
Arg
ACG
[ENA]
¡û
>W1711184356
LWMA01000012
Gammaproteobacteria
Pseudomonas putida [LWMA]
195444
195520
+
Arg
ACG
[ENA]
¡û
>W1711184357
LWMA01000012
Gammaproteobacteria
Pseudomonas putida [LWMA]
195594
195670
+
Arg
ACG
[ENA]
¡û
>C171056529
CP017073
Gammaproteobacteria
Pseudomonas putida PP112420 [CP017073]
4349834
4349758
-
Arg
ACG
-
¡û
>C171056530
CP017073
Gammaproteobacteria
Pseudomonas putida PP112420 [CP017073]
4349686
4349610
-
Arg
ACG
-
¡û
>C171056531
CP017073
Gammaproteobacteria
Pseudomonas putida PP112420 [CP017073]
4349536
4349460
-
Arg
ACG
-
¡û
>C171056532
CP017073
Gammaproteobacteria
Pseudomonas putida PP112420 [CP017073]
4349386
4349310
-
Arg
ACG
-
¡û
>w023242
AAXR01000004
Gammaproteobacteria
Pseudomonas putida GB-1 [AAXR]
60052
60130
+
Arg
ACG
[ENA]
¡û
>w023241
AAXR01000004
Gammaproteobacteria
Pseudomonas putida GB-1 [AAXR]
59902
59980
+
Arg
ACG
[ENA]
¡û
>w023240
AAXR01000004
Gammaproteobacteria
Pseudomonas putida GB-1 [AAXR]
59752
59830
+
Arg
ACG
[ENA]
¡û
>w023239
AAXR01000004
Gammaproteobacteria
Pseudomonas putida GB-1 [AAXR]
59604
59682
+
Arg
ACG
[ENA]
¡û
>C08007781
CP000926
Gammaproteobacteria
Pseudomonas putida GB-1 [CP000926]
4422950
4422877
-
Arg
ACG
[Ensembl]
¡û
>C08007782
CP000926
Gammaproteobacteria
Pseudomonas putida GB-1 [CP000926]
4422802
4422729
-
Arg
ACG
[Ensembl]
¡û
>C08007783
CP000926
Gammaproteobacteria
Pseudomonas putida GB-1 [CP000926]
4422652
4422579
-
Arg
ACG
[Ensembl]
¡û
>C08007784
CP000926
Gammaproteobacteria
Pseudomonas putida GB-1 [CP000926]
4422502
4422429
-
Arg
ACG
[Ensembl]
¡û
>WENV183728037
PJTP01021253
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
213
289
+
Arg
ACG
[ENA]
¢þ
>WENV183728038
PJTP01021253
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
362
438
+
Arg
ACG
[ENA]
¢þ
>WENV183728039
PJTP01021253
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
512
588
+
Arg
ACG
[ENA]
¢þ
>WENV183728166
PJTP01052915
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
337
261
-
Arg
ACG
[ENA]
¢þ
>WENV170022926
BCQK01078419
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
569
493
-
Arg
ACG
[ENA]
¢þ
>WENV170022927
BCQK01078419
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
420
344
-
Arg
ACG
[ENA]
¢þ
>W1910747757
MIND01000018
Gammaproteobacteria
Pseudomonas putida KT-27 [MIND]
2317330
2317406
+
Arg
ACG
[ENA]
¡û
>W1910747758
MIND01000018
Gammaproteobacteria
Pseudomonas putida KT-27 [MIND]
2317479
2317555
+
Arg
ACG
[ENA]
¡û
>W1910747759
MIND01000018
Gammaproteobacteria
Pseudomonas putida KT-27 [MIND]
2317629
2317705
+
Arg
ACG
[ENA]
¡û
>W1910748003
MINH01000019
Gammaproteobacteria
Pseudomonas putida KH-21-114 [MINH]
309285
309361
+
Arg
ACG
[ENA]
¡û
>W1910748005
MINH01000019
Gammaproteobacteria
Pseudomonas putida KH-21-114 [MINH]
309583
309659
+
Arg
ACG
[ENA]
¡û
>W1910748006
MINH01000019
Gammaproteobacteria
Pseudomonas putida KH-21-114 [MINH]
309730
309806
+
Arg
ACG
[ENA]
¡û
>W1910748063
MINI01000028
Gammaproteobacteria
Pseudomonas putida KH-21-134 [MINI]
1304484
1304560
+
Arg
ACG
[ENA]
¡û
>W1910748065
MINI01000028
Gammaproteobacteria
Pseudomonas putida KH-21-134 [MINI]
1304782
1304858
+
Arg
ACG
[ENA]
¡û
>W1910748066
MINI01000028
Gammaproteobacteria
Pseudomonas putida KH-21-134 [MINI]
1304929
1305005
+
Arg
ACG
[ENA]
¡û
>W1610059427
BCBA01000013
Gammaproteobacteria
Pseudomonas sp. NBRC 111124 [BCBA]
280406
280330
-
Arg
ACG
[ENA]
¡û
>W1610059430
BCBA01000014
Gammaproteobacteria
Pseudomonas sp. NBRC 111124 [BCBA]
128
52
-
Arg
ACG
[ENA]
¡û
>W1610060321
BCBQ01000157
Gammaproteobacteria
Pseudomonas sp. NBRC 111140 [BCBQ]
6732
6656
-
Arg
ACG
[ENA]
¡û
>W1710056488
BCBA01000013
Gammaproteobacteria
Pseudomonas sp. NBRC 111124 [BCBA]
280406
280330
-
Arg
ACG
[ENA]
¡û
>W1710056491
BCBA01000014
Gammaproteobacteria
Pseudomonas sp. NBRC 111124 [BCBA]
128
52
-
Arg
ACG
[ENA]
¡û
>W1710057510
BCBQ01000157
Gammaproteobacteria
Pseudomonas sp. NBRC 111140 [BCBQ]
6732
6656
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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