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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.315852 (29 seq.)
>W1710785429
LJHV01000023
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
47027
47102
+
Thr
TGT
[ENA]
¡û
>W1710912507
LNRR01000003
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
172123
172198
+
Thr
TGT
[ENA]
¡û
>W1710912631
LNRT01000020
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
35567
35492
-
Thr
TGT
[ENA]
¡û
>C171094561
CP019449
Alphaproteobacteria
Sphingopyxis sp. QXT-31 [CP019449]
2047497
2047572
+
Thr
TGT
-
¡û
>C171096156
CP019602
Alphaproteobacteria
Croceicoccus marinus E4A9 [CP019602]
1854816
1854891
+
Thr
TGT
-
¡û
>W131196359
ASTG01000013
Alphaproteobacteria
Sphingobium bisphenolivorans YL23 [ASTG]
110332
110407
+
Thr
TGT
[ENA]
¡û
>C014697
CP000248
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [CP000248]
2752877
2752952
+
Thr
TGT
[Ensembl]
¡û
>WENV183093009
OLLQ01000699
[OLLQ] soil metagenome; soil
3092
3017
-
Thr
TGT
[ENA]
¢þ
>WENV170176195
CEOS01049883
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4063
4138
+
Thr
TGT
[ENA]
¢þ
>WENV170570734
FLOH01000019
[FLOH] marine metagenome; water
122904
122829
-
Thr
TGT
[ENA]
¢þ
>WENV170904809
MDTE01016969
[MDTE] marine metagenome; seawater
429
504
+
Thr
TGT
[ENA]
¢þ
>C181192056
CP030352
Alphaproteobacteria
Novosphingobium sp. P6W [CP030352, CP030353]
3030773
3030848
+
Thr
TGT
-
¡û
>C191002578
AP018498
Alphaproteobacteria
Altererythrobacter sp. B11 [AP018498]
3452832
3452907
+
Thr
TGT
-
¡û
>W1910199172
FBVU01000012
Alphaproteobacteria
Sphingobium sp. Z007 [FBVU]
68247
68172
-
Thr
TGT
[ENA]
¡û
>SRA1001817
SRR001308.69686
Metagenomic characterization of a wastewater treatment plant (SRP000180)
236
161
-
Thr
TGT
[SRA]
>SRA1001909
SRR001308.120671
Metagenomic characterization of a wastewater treatment plant (SRP000180)
249
174
-
Thr
TGT
[SRA]
>W1810677144
QKMM01000017
Alphaproteobacteria
Novosphingobium sp. B3058 49 [QKMM]
42119
42044
-
Thr
TGT
[ENA]
¡û
>C151044384
CP009122
Alphaproteobacteria
Sphingopyxis fribergensis Kp5.2 [CP009122]
3124995
3125070
+
Thr
TGT
[Ensembl]
¡û
>W1510756958
JACT01000001
Alphaproteobacteria
Sphingobium cupriresistens LL01 [JACT]
1364576
1364501
-
Thr
TGT
[ENA]
¡û
>W1510757030
JACU01000005
Alphaproteobacteria
Novosphingobium barchaimii LL02 [JACU]
360506
360581
+
Thr
TGT
[ENA]
¡û
>W1511519386
JXZE01000002
Alphaproteobacteria
Novosphingobium sp. P6W [JXZE]
442364
442439
+
Thr
TGT
[ENA]
¡û
>W121009702
AGFM01000038
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [AGFM]
26259
26184
-
Thr
TGT
[ENA]
¡û
>W121086748
AKKE01000175
Alphaproteobacteria
Novosphingobium sp. AP12 [AKKE]
44479
44404
-
Thr
TGT
[ENA]
¡û
>W1610077059
BCZF01000041
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
160358
160433
+
Thr
TGT
[ENA]
¡û
>W1610649235
LJHV01000023
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
47027
47102
+
Thr
TGT
[ENA]
¡û
>W1610770866
LNRR01000003
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
172123
172198
+
Thr
TGT
[ENA]
¡û
>W1610770990
LNRT01000020
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
35567
35492
-
Thr
TGT
[ENA]
¡û
>W1710074748
BCZF01000041
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
160358
160433
+
Thr
TGT
[ENA]
¡û
>W1710604586
FVZE01000005
Alphaproteobacteria
Novosphingobium mathurense [FVZE]
6536
6461
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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