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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.315946 (34 seq.)
>W1710863197
LMEX01000001
Gammaproteobacteria
Rhodanobacter sp. Root480 [LMEX]
542649
542574
-
Glu
TTC
[ENA]
¡û
>W1710865683
LMGW01000001
Gammaproteobacteria
Rhodanobacter sp. Root627 [LMGW]
572329
572254
-
Glu
TTC
[ENA]
¡û
>W1711387205
MEGK01000009
Gammaproteobacteria
Rhodanobacter sp. SCN 66-43 [MEGK]
158595
158520
-
Glu
TTC
[ENA]
¡û
>W1711506651
MKWP01000002
Gammaproteobacteria
Xanthomonadales bacterium 66-474 [MKWP]
330718
330643
-
Glu
TTC
[ENA]
¡û
>W131046172
AMSF01000016
Gammaproteobacteria
Dyella ginsengisoli LA-4 [AMSF]
159054
159129
+
Glu
TTC
[ENA]
¡û
>W141274358
JAAN01000021
Gammaproteobacteria
Luteimonas huabeiensis HB2 [JAAN]
98357
98432
+
Glu
TTC
[ENA]
¡û
>WENV170668363
LADL02003260
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
2833
2758
-
Glu
TTC
[ENA]
¢þ
>C191003477
AP018560
Gammaproteobacteria
Aerosticca soli Dysh456 [AP018560]
2091102
2091177
+
Glu
TTC
-
¡û
>C191139370
CP035376
Gammaproteobacteria
Luteimonas sp. YGD11-2 [CP035376]
1723015
1723090
+
Glu
TTC
-
¡û
>C191165675
CP039383
Gammaproteobacteria
Luteimonas yindakuii S-1072 [CP039383]
1630402
1630477
+
Glu
TTC
-
¡û
>W1910797078
MSPY01000003
Gammaproteobacteria
Oleiagrimonas sp. MCCC 1A03011 [MSPY]
233381
233306
-
Glu
TTC
[ENA]
¡û
>W1911405230
NWQL01000002
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0213 [NWQL]
327082
327007
-
Glu
TTC
[ENA]
¡û
>W1911405438
NWQQ01000010
Gammaproteobacteria
Xanthomonadaceae bacterium NML95-0200 [NWQQ]
107976
108051
+
Glu
TTC
[ENA]
¡û
>W1810597204
QGHC01000001
Gammaproteobacteria
Fulvimonas soli DSM 14263 [QGHC]
401940
401865
-
Glu
TTC
[ENA]
¡û
>W1510018843
BBUM02000145
Gammaproteobacteria
Mizugakiibacter sediminis skMP5 [BBUM]
4040
4115
+
Glu
TTC
[ENA]
¡û
>W1511352609
JROI01000011
Gammaproteobacteria
Oleiagrimonas soli 3.5X [JROI]
68758
68833
+
Glu
TTC
[ENA]
¡û
>C121011564
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
2700355
2700430
+
Glu
TTC
[Ensembl]
¡û
>C121011567
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
2700695
2700770
+
Glu
TTC
[Ensembl]
¡û
>C121011570
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
2701022
2701097
+
Glu
TTC
[Ensembl]
¡û
>C161078259
CP014841
Gammaproteobacteria
Dyella thiooxydans ATSB10 [CP014841]
867108
867033
-
Glu
TTC
[Ensembl]
¡û
>W121017529
AGRV01000008
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
271076
271001
-
Glu
TTC
[ENA]
¡û
>W121017532
AGRV01000008
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
270749
270674
-
Glu
TTC
[ENA]
¡û
>W121017579
AGRV01000013
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
255
180
-
Glu
TTC
[ENA]
¡û
>W121071200
AJXS01000328
Gammaproteobacteria
Rhodanobacter sp. 115 [AJXS]
7755
7680
-
Glu
TTC
[ENA]
¡û
>W121071300
AJXU01000075
Gammaproteobacteria
Rhodanobacter fulvus Jip2 [AJXU]
34653
34728
+
Glu
TTC
[ENA]
¡û
>W1610207407
FCOY01000006
Gammaproteobacteria
Xanthomonas massiliensis SN8 [FCOY]
1092373
1092298
-
Glu
TTC
[ENA]
¡û
>W1610207409
FCOY01000006
Gammaproteobacteria
Xanthomonas massiliensis SN8 [FCOY]
1092111
1092036
-
Glu
TTC
[ENA]
¡û
>W1610547646
JUKH01000010
Gammaproteobacteria
Luteimonas abyssi [JUKH]
529217
529142
-
Glu
TTC
[ENA]
¡û
>W1610725543
LMEX01000001
Gammaproteobacteria
Rhodanobacter sp. Root480 [LMEX]
542649
542574
-
Glu
TTC
[ENA]
¡û
>W1610728029
LMGW01000001
Gammaproteobacteria
Rhodanobacter sp. Root627 [LMGW]
572329
572254
-
Glu
TTC
[ENA]
¡û
>W1710208041
FCOY01000006
Gammaproteobacteria
Xanthomonas massiliensis SN8 [FCOY]
1092373
1092298
-
Glu
TTC
[ENA]
¡û
>W1710208043
FCOY01000006
Gammaproteobacteria
Xanthomonas massiliensis SN8 [FCOY]
1092111
1092036
-
Glu
TTC
[ENA]
¡û
>W1710567361
FOSR01000015
Gammaproteobacteria
Rhodanobacter glycinis [FOSR]
54310
54385
+
Glu
TTC
[ENA]
¡û
>W1710650891
JUKH01000010
Gammaproteobacteria
Luteimonas abyssi [JUKH]
529217
529142
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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