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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.315947 (55 seq.)
>W1710811735
LKIT01000002
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
1285544
1285619
+
Ala
CGC
[ENA]
¡û
>W1710865793
LMGY01000016
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
355035
355110
+
Ala
CGC
[ENA]
¡û
>W1710872145
LMLT01000006
Gammaproteobacteria
Stenotrophomonas sp. Leaf70 [LMLT]
520867
520942
+
Ala
CGC
[ENA]
¡û
>W1711506444
MKWK01000004
Gammaproteobacteria
Stenotrophomonas sp. 69-14 [MKWK]
436255
436180
-
Ala
CGC
[ENA]
¡û
>W1711680586
MRWM01000181
Gammaproteobacteria
Pseudomonas sp. BIN4 [MRWM]
289
214
-
Ala
CGC
[ENA]
¡û
>WENV180035893
FTLB01040291
[FTLB] metagenome; soil
384
309
-
Ala
CGC
[ENA]
¢þ
>WENV180298030
OBJA01143706
[OBJA] soil metagenome; sediment, water from around vicinity
129
54
-
Ala
CGC
[ENA]
¢þ
>W141039823
ALYK02000047
Gammaproteobacteria
Stenotrophomonas maltophilia S028 [ALYK]
5453
5528
+
Ala
CGC
[ENA]
¡û
>W141215590
AZUH01000002
Gammaproteobacteria
Pseudoxanthomonas suwonensis J42 [AZUH]
243119
243194
+
Ala
CGC
[ENA]
¡û
>W141216568
AZUZ01000006
Gammaproteobacteria
Pseudoxanthomonas suwonensis J47 [AZUZ]
60214
60289
+
Ala
CGC
[ENA]
¡û
>W141277585
JAES01000010
Gammaproteobacteria
Pseudoxanthomonas suwonensis J43 [JAES]
60214
60289
+
Ala
CGC
[ENA]
¡û
>WENV183731941
PJTU01000014
[PJTU] soil metagenome; Soil enriched on wood chips: beechwood xylan treatment
55734
55659
-
Ala
CGC
[ENA]
¢þ
>WENV183733321
PJTY01001022
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
8473
8398
-
Ala
CGC
[ENA]
¢þ
>WENV183735510
PJUB01000025
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
107414
107489
+
Ala
CGC
[ENA]
¢þ
>WENV183741513
PJUG01000036
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
124739
124814
+
Ala
CGC
[ENA]
¢þ
>WENV183743164
PJUJ01000070
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
55933
55858
-
Ala
CGC
[ENA]
¢þ
>WENV183743911
PJUK01000039
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
124739
124814
+
Ala
CGC
[ENA]
¢þ
>WENV183744652
PJUL01000047
[PJUL] feces metagenome; Chicken feces enriched on filter paper
124739
124814
+
Ala
CGC
[ENA]
¢þ
>WENV183745195
PJUL01005305
[PJUL] feces metagenome; Chicken feces enriched on filter paper
927
1002
+
Ala
CGC
[ENA]
¢þ
>WENV170000202
AERA01024097
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
429
504
+
Ala
CGC
[ENA]
¢þ
>WENV170706722
LNAP01005879
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
11818
11893
+
Ala
CGC
[ENA]
¢þ
>WENV170707623
LNAP01027702
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2808
2733
-
Ala
CGC
[ENA]
¢þ
>WENV170707833
LNAP01035908
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
17
92
+
Ala
CGC
[ENA]
¢þ
>WENV170721797
LSQX01203792
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
11608
11533
-
Ala
CGC
[ENA]
¢þ
>C181001021
AP014940
Gammaproteobacteria
Lysobacter enzymogenes M497-1 [AP014940]
3982106
3982181
+
Ala
CGC
-
¡û
>C181180375
CP029556
Gammaproteobacteria
Lysobacter oculi 83-4 [CP029556]
1155133
1155208
+
Ala
CGC
-
¡û
>C191139372
CP035376
Gammaproteobacteria
Luteimonas sp. YGD11-2 [CP035376]
1891655
1891730
+
Ala
CGC
-
¡û
>C191165677
CP039383
Gammaproteobacteria
Luteimonas yindakuii S-1072 [CP039383]
1796437
1796512
+
Ala
CGC
-
¡û
>C191181083
CP040656
Gammaproteobacteria
Lysobacter enzymogenes YC36 [CP040656]
2123113
2123038
-
Ala
CGC
-
¡û
>C191186038
CP041046
Gammaproteobacteria
Luteibacter pinisoli MAH-14 [CP041046]
1916888
1916813
-
Ala
CGC
-
¡û
>W1910896591
NFZS01000001
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
2017687
2017612
-
Ala
CGC
[ENA]
¡û
>W1911162513
NPZB01000001
Gammaproteobacteria
Lysobacter silvestris AM20-91 [NPZB]
1504909
1504984
+
Ala
CGC
[ENA]
¡û
>W1911283848
NTJI01000004
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0399 [NTJI]
51849
51774
-
Ala
CGC
[ENA]
¡û
>W1911405219
NWQL01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0213 [NWQL]
910499
910424
-
Ala
CGC
[ENA]
¡û
>W1810452278
PZOY01000007
Gammaproteobacteria
Stenotrophomonas panacihumi GSS15 [PZOY]
15321
15396
+
Ala
CGC
[ENA]
¡û
>W1810692814
QLKV01000014
Gammaproteobacteria
Thermomonas haemolytica HAMBI_2467 [QLKV]
16602
16527
-
Ala
CGC
[ENA]
¡û
>C151023726
CP007444
Gammaproteobacteria
Dyella jiangningensis SBZ3-12 [CP007444]
2363287
2363362
+
Ala
CGC
[Ensembl]
¡û
>WENV11100560
AERA01024097
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
429
504
+
Ala
CGC
[ENA]
¡û
>W11172543
AFSN01000011
Gammaproteobacteria
Pseudoxanthomonas spadix BD-a59 [AFSN]
404192
404117
-
Ala
CGC
[ENA]
¡û
>C161052066
CP013140
Gammaproteobacteria
Lysobacter enzymogenes C3 [CP013140]
1926070
1925995
-
Ala
CGC
[Ensembl]
¡û
>W1610207398
FCOY01000006
Gammaproteobacteria
Xanthomonas massiliensis SN8 [FCOY]
1483152
1483227
+
Ala
CGC
[ENA]
¡û
>W1610547643
JUKH01000010
Gammaproteobacteria
Luteimonas abyssi [JUKH]
823469
823544
+
Ala
CGC
[ENA]
¡û
>W1610587259
LDJO01000035
Gammaproteobacteria
Stenotrophomonas acidaminiphila [LDJO]
3452
3377
-
Ala
CGC
[ENA]
¡û
>W1610587323
LDJP01000077
Gammaproteobacteria
Stenotrophomonas daejeonensis [LDJP]
12380
12305
-
Ala
CGC
[ENA]
¡û
>WENV007363
AACY020193090
Marine microbial communities from Global Ocean Sampling (GOS)
651
576
-
Ala
CGC
[ENA]
>W1610675832
LKIT01000002
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
1285544
1285619
+
Ala
CGC
[ENA]
¡û
>W1610728139
LMGY01000016
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
355035
355110
+
Ala
CGC
[ENA]
¡û
>W1610734491
LMLT01000006
Gammaproteobacteria
Stenotrophomonas sp. Leaf70 [LMLT]
520867
520942
+
Ala
CGC
[ENA]
¡û
>W1710208032
FCOY01000006
Gammaproteobacteria
Xanthomonas massiliensis SN8 [FCOY]
1483152
1483227
+
Ala
CGC
[ENA]
¡û
>W1710529761
FNOG01000004
Gammaproteobacteria
Lysobacter enzymogenes [FNOG]
479117
479192
+
Ala
CGC
[ENA]
¡û
>W1710531732
FNPT01000010
Gammaproteobacteria
Lysobacter sp. yr284 [FNPT]
154389
154464
+
Ala
CGC
[ENA]
¡û
>W1710582996
FQUK01000037
Gammaproteobacteria
Thermomonas hydrothermalis [FQUK]
8039
7964
-
Ala
CGC
[ENA]
¡û
>W1710650888
JUKH01000010
Gammaproteobacteria
Luteimonas abyssi [JUKH]
823469
823544
+
Ala
CGC
[ENA]
¡û
>W1710706389
LDJO01000035
Gammaproteobacteria
Stenotrophomonas acidaminiphila [LDJO]
3452
3377
-
Ala
CGC
[ENA]
¡û
>W1710706453
LDJP01000077
Gammaproteobacteria
Stenotrophomonas daejeonensis [LDJP]
12380
12305
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK