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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.315977 (81 seq.)
>W1710860327
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
2225215
2225290
+
Lys
CTT
[ENA]
¡û
>W1710872346
LMLX01000003
Actinomycetota
Agreia sp. Leaf244 [LMLX]
382341
382266
-
Lys
CTT
[ENA]
¡û
>W1710873983
LMNF01000003
Actinomycetota
Agreia sp. Leaf283 [LMNF]
44787
44862
+
Lys
CTT
[ENA]
¡û
>W131216955
ATWH01000011
Actinomycetota
Glaciibacter superstes DSM 21135 [ATWH]
206312
206387
+
Lys
CTT
[ENA]
¡û
>C171057858
CP017150
Actinomycetota
Brevibacterium aurantiacum SMQ-1335 [CP017150]
3065861
3065936
+
Lys
CTT
-
¡û
>WENV180016209
FSUF01000947
[FSUF] metagenome; soil
2375
2448
+
Lys
CTT
[ENA]
¢þ
>WENV180016684
FSVT01000123
[FSVT] metagenome; soil
1989
2062
+
Lys
CTT
[ENA]
¢þ
>WENV180017273
FSWR01000048
[FSWR] metagenome; soil
32358
32433
+
Lys
CTT
[ENA]
¢þ
>WENV180023995
FTIF01006437
[FTIF] metagenome; soil
374
449
+
Lys
CTT
[ENA]
¢þ
>WENV180024114
FTIF01048386
[FTIF] metagenome; soil
3527
3602
+
Lys
CTT
[ENA]
¢þ
>WENV180026345
FTIT01002043
[FTIT] metagenome; soil
2392
2467
+
Lys
CTT
[ENA]
¢þ
>WENV180029207
FTJI01181318
[FTJI] metagenome; soil
52
125
+
Lys
CTT
[ENA]
¢þ
>WENV180029300
FTJI01463382
[FTJI] metagenome; soil
652
577
-
Lys
CTT
[ENA]
¢þ
>WENV180030895
FTJN01380894
[FTJN] metagenome; soil
1023
950
-
Lys
CTT
[ENA]
¢þ
>WENV180030959
FTJN01756822
[FTJN] metagenome; soil
45
118
+
Lys
CTT
[ENA]
¢þ
>WENV180034734
FTKR01197295
[FTKR] metagenome; soil
52
125
+
Lys
CTT
[ENA]
¢þ
>WENV180034827
FTKR01498117
[FTKR] metagenome; soil
652
577
-
Lys
CTT
[ENA]
¢þ
>w005547
AAGP01000009
Actinomycetota
Brevibacterium aurantiacum BL2 [AAGP]
100604
100679
+
Lys
CTT
[ENA]
¡û
>WENV180214653
OBAP01028542
[OBAP] marine metagenome; ENVO:00002010 for 'seawater
175
100
-
Lys
CTT
[ENA]
¢þ
>WENV180305330
OBJL01009501
[OBJL] human gut metagenome; Skin biopsy
290
365
+
Lys
CTT
[ENA]
¢þ
>WENV180344779
OBLL01186047
[OBLL] soil metagenome; soil
181
256
+
Lys
CTT
[ENA]
¢þ
>WENV180394566
OBPS01018270
[OBPS] marine metagenome; ENVO:00002010 seawater
585
660
+
Lys
CTT
[ENA]
¢þ
>WENV181384832
OFRI01013493
[OFRI] wastewater metagenome; Exp Tend VB 90WW
246
321
+
Lys
CTT
[ENA]
¢þ
>W141282902
JAJB01000033
Actinomycetota
Brevibacterium sp. VCM10 [JAJB]
35604
35677
+
Lys
CTT
[ENA]
¡û
>WENV183628925
OOGO01065694
[OOGO] marine metagenome; sea ice
187
112
-
Lys
CTT
[ENA]
¢þ
>WENV170601251
FUWD010163832
[FUWD] metagenome; unknown
431
506
+
Lys
CTT
[ENA]
¢þ
>WENV170601984
FUWD010206953
[FUWD] metagenome; unknown
114
39
-
Lys
CTT
[ENA]
¢þ
>WENV170602807
FUWD010264861
[FUWD] metagenome; unknown
380
307
-
Lys
CTT
[ENA]
¢þ
>WENV170609074
FUWD011236588
[FUWD] metagenome; unknown
125
198
+
Lys
CTT
[ENA]
¢þ
>C181002030
AP017457
Actinomycetota
Aurantimicrobium minutum KNC [AP017457]
251202
251275
+
Lys
CTT
-
¡û
>C181092827
CP023994
Actinomycetota
Aurantimicrobium photophilum MWH-Mo1 [CP023994]
1125069
1124996
-
Lys
CTT
-
¡û
>C181143945
CP026949
Actinomycetota
Mycetocola zhujimingii 449 [CP026949]
1976767
1976692
-
Lys
CTT
-
¡û
>C181194472
CP030929
Actinomycetota
Aurantimicrobium sp. MWH-Uga1 [CP030929]
1150481
1150408
-
Lys
CTT
-
¡û
>C191031861
CP025330
Actinomycetota
Brevibacterium aurantiacum SMQ-1417 [CP025330]
3098082
3098157
+
Lys
CTT
-
¡û
>C191031909
CP025331
Actinomycetota
Brevibacterium aurantiacum SMQ-1418 [CP025331]
2920096
2920171
+
Lys
CTT
-
¡û
>C191031957
CP025332
Actinomycetota
Brevibacterium aurantiacum SMQ-1421 [CP025332]
2788504
2788579
+
Lys
CTT
-
¡û
>C191032005
CP025333
Actinomycetota
Brevibacterium aurantiacum SMQ-1419 [CP025333]
2879943
2880018
+
Lys
CTT
-
¡û
>C191032052
CP025334
Actinomycetota
Brevibacterium aurantiacum SMQ-1420 [CP025334]
3076797
3076872
+
Lys
CTT
-
¡û
>C191046851
CP026734
Actinomycetota
Brevibacterium linens ATCC 19391 [CP026734]
2708766
2708839
+
Lys
CTT
-
¡û
>C191178398
CP040510
Actinomycetota
Rhodoluna limnophila 36A-HELLB [CP040510]
280072
280147
+
Lys
CTT
-
¡û
>W1910181653
BJME01000033
Actinomycetota
Brevibacterium aurantiacum NBRC 12171 [BJME]
5086
5161
+
Lys
CTT
[ENA]
¡û
>W1910442415
FWFF01000017
Actinomycetota
Brevibacterium yomogidense B Co 03.10 [FWFF]
192022
191949
-
Lys
CTT
[ENA]
¡û
>W1910500011
FXYX01000019
Actinomycetota
Brevibacterium iodinum ATCC 49514 [FXYX]
6936
7009
+
Lys
CTT
[ENA]
¡û
>W1910500031
FXYY01000002
Actinomycetota
Brevibacterium linens ATCC 9172 [FXYY]
22901
22828
-
Lys
CTT
[ENA]
¡û
>W1910500093
FXYZ01000006
Actinomycetota
Brevibacterium aurantiacum [FXYZ]
271925
271850
-
Lys
CTT
[ENA]
¡û
>W1910500155
FXZA01000014
Actinomycetota
Brevibacterium linens Mu101 [FXZA]
54555
54628
+
Lys
CTT
[ENA]
¡û
>W1910500208
FXZB01000036
Actinomycetota
Brevibacterium aurantiacum ATCC 9175 [FXZB]
20636
20561
-
Lys
CTT
[ENA]
¡û
>W1910500286
FXZD01000004
Actinomycetota
Brevibacterium antiquum CNRZ 918 [FXZD]
39816
39743
-
Lys
CTT
[ENA]
¡û
>W1910500316
FXZE01000002
Actinomycetota
Brevibacterium antiquum P10 [FXZE]
224843
224770
-
Lys
CTT
[ENA]
¡û
>W1910500373
FXZF01000008
Actinomycetota
Brevibacterium sp. Mu109 [FXZF]
8346
8419
+
Lys
CTT
[ENA]
¡û
>W1910500418
FXZG01000004
Actinomycetota
Brevibacterium aurantiacum CNRZ 920 [FXZG]
140703
140628
-
Lys
CTT
[ENA]
¡û
>W1910500469
FXZH01000011
Actinomycetota
Brevibacterium sp. 239c [FXZH]
11055
11130
+
Lys
CTT
[ENA]
¡û
>W1910500541
FXZI01000025
Actinomycetota
Brevibacterium aurantiacum [FXZI]
8731
8806
+
Lys
CTT
[ENA]
¡û
>W1910857493
NBWZ01000001
Actinomycetota
Subtercola boreus K300 [NBWZ]
879867
879942
+
Lys
CTT
[ENA]
¡û
>W1910857537
NBXA01000007
Actinomycetota
Subtercola boreus P27444 [NBXA]
194531
194606
+
Lys
CTT
[ENA]
¡û
>W1910857581
NBXB01000011
Actinomycetota
Subtercola boreus P27479 [NBXB]
246676
246751
+
Lys
CTT
[ENA]
¡û
>W1911203156
NRGO01000027
Actinomycetota
Brevibacterium aurantiacum 900_6 [NRGO]
84119
84194
+
Lys
CTT
[ENA]
¡û
>W1911203173
NRGP01000004
Actinomycetota
Brevibacterium aurantiacum 947_7 [NRGP]
115061
114986
-
Lys
CTT
[ENA]
¡û
>W1911203242
NRGQ01000022
Actinomycetota
Brevibacterium aurantiacum 962_8 [NRGQ]
96677
96752
+
Lys
CTT
[ENA]
¡û
>W1911203582
NRGX01000001
Actinomycetota
Brevibacterium aurantiacum JB5 [NRGX]
558658
558733
+
Lys
CTT
[ENA]
¡û
>W1911203793
NRHA01000007
Actinomycetota
Brevibacterium aurantiacum 738_8 [NRHA]
270958
271033
+
Lys
CTT
[ENA]
¡û
>W1911203861
NRHB01000011
Actinomycetota
Brevibacterium aurantiacum 341_13 [NRHB]
118130
118055
-
Lys
CTT
[ENA]
¡û
>W1911798577
QYRT01000010
Actinomycetota
Subtercola vilae DB165 [QYRT]
94371
94446
+
Lys
CTT
[ENA]
¡û
>W1911823628
QZVS01000097
Actinomycetota
Cryobacterium melibiosiphilum Hh39 [QZVS]
319157
319082
-
Lys
CTT
[ENA]
¡û
>W1810057063
PDHL01000044
Actinomycetota
Brevibacterium epidermidis EZ-K02 [PDHL]
92301
92374
+
Lys
CTT
[ENA]
¡û
>W1810168760
PJJM01000101
Actinomycetota
Cryobacterium sp. Y50 [PJJM]
24053
24128
+
Lys
CTT
[ENA]
¡û
>W1810240363
PPTG01000021
Actinomycetota
Cryobacterium aureum Hh31 [PPTG]
35454
35529
+
Lys
CTT
[ENA]
¡û
>W1810277312
PSTT01000026
Actinomycetota
Subtercola sp. Z020 [PSTT]
4756
4831
+
Lys
CTT
[ENA]
¡û
>W1810569030
QEFB01000001
Actinomycetota
Mycetocola zhujimingii 622 [QEFB]
674875
674800
-
Lys
CTT
[ENA]
¡û
>W1810657153
QJHB01000003
Actinomycetota
Homoserinimonas sp. OAct 916 [QJHB]
305566
305639
+
Lys
CTT
[ENA]
¡û
>W1810756566
QPGC01000080
Actinomycetota
Brevibacterium aurantiacum 862_7 [QPGC]
13087
13012
-
Lys
CTT
[ENA]
¡û
>W1810756601
QPGD01000013
Actinomycetota
Brevibacterium aurantiacum 876_7 [QPGD]
271136
271211
+
Lys
CTT
[ENA]
¡û
>W1810756641
QPGE01000008
Actinomycetota
Brevibacterium aurantiacum 908_7 [QPGE]
99400
99475
+
Lys
CTT
[ENA]
¡û
>W1511402430
JTJZ01000019
Actinomycetota
Brevibacterium linens AE038-8 [JTJZ]
142367
142440
+
Lys
CTT
[ENA]
¡û
>C161078904
CP014869
Actinomycetota
Brevibacterium linens BS258 [CP014869]
2837332
2837405
+
Lys
CTT
[Ensembl]
¡û
>W1610722673
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
2225215
2225290
+
Lys
CTT
[ENA]
¡û
>W1610734692
LMLX01000003
Actinomycetota
Agreia sp. Leaf244 [LMLX]
382341
382266
-
Lys
CTT
[ENA]
¡û
>W1610736329
LMNF01000003
Actinomycetota
Agreia sp. Leaf283 [LMNF]
44787
44862
+
Lys
CTT
[ENA]
¡û
>W1710570908
FOVM01000002
Actinomycetota
Mycetocola miduiensis [FOVM]
86202
86277
+
Lys
CTT
[ENA]
¡û
>W1710602503
FUYG01000004
Actinomycetota
Agreia bicolorata VKM Ac-2052 [FUYG]
281261
281336
+
Lys
CTT
[ENA]
¡û
>W1710609286
FXWI01000001
Actinomycetota
Agreia sp. VKM Ac-1783 [FXWI]
567963
568038
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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