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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.316120 (34 seq.)
>C028399
CP000230
Alphaproteobacteria
Rhodospirillum rubrum ATCC 11170 [CP000230]
194332
194407
+
Ala
TGC
[Ensembl]
¡û
>C028400
CP000230
Alphaproteobacteria
Rhodospirillum rubrum ATCC 11170 [CP000230]
913200
913275
+
Ala
TGC
[Ensembl]
¡û
>C028401
CP000230
Alphaproteobacteria
Rhodospirillum rubrum ATCC 11170 [CP000230]
3810370
3810295
-
Ala
TGC
[Ensembl]
¡û
>C028402
CP000230
Alphaproteobacteria
Rhodospirillum rubrum ATCC 11170 [CP000230]
2735322
2735247
-
Ala
TGC
[Ensembl]
¡û
>WENV180040113
LLBY010389691
[LLBY] soil metagenome; soil from tomato rhizosphere
209
134
-
Ala
TGC
[ENA]
¢þ
>WENV180261478
OBEQ011298079
[OBEQ] groundwater metagenome; groundwater
180
255
+
Ala
TGC
[ENA]
¢þ
>w001375
AAAG02000010
Alphaproteobacteria
Rhodospirillum rubrum [AAAG]
2537
2612
+
Ala
TGC
[ENA]
¡û
>w001335
AAAG02000001
Alphaproteobacteria
Rhodospirillum rubrum [AAAG]
1073429
1073357
-
Ala
TGC
[ENA]
¡û
>WENV181123015
OEFO01034251
[OEFO] soil metagenome; soil
160
235
+
Ala
TGC
[ENA]
¢þ
>WENV181162559
OEIO01000754
[OEIO] marine metagenome; sea ice
3562
3487
-
Ala
TGC
[ENA]
¢þ
>WENV181162696
OEIO01007255
[OEIO] marine metagenome; sea ice
361
436
+
Ala
TGC
[ENA]
¢þ
>WENV181162721
OEIO01008862
[OEIO] marine metagenome; sea ice
735
660
-
Ala
TGC
[ENA]
¢þ
>WENV181163829
OEIQ01284598
[OEIQ] soil metagenome; soil
53
128
+
Ala
TGC
[ENA]
¢þ
>WENV181164228
OEIR01065707
[OEIR] soil metagenome; soil
174
249
+
Ala
TGC
[ENA]
¢þ
>WENV181323144
OFKW01012934
[OFKW] marine metagenome; sea ice
461
536
+
Ala
TGC
[ENA]
¢þ
>C08007332
CP000774
Alphaproteobacteria
Parvibaculum lavamentivorans DS-1 [CP000774]
1903071
1903146
+
Ala
TGC
[Ensembl]
¡û
>W141241711
CAHM01000373
Alphaproteobacteria
Microvirga massiliensis JC119 [CAHM]
2051
2126
+
Ala
TGC
[ENA]
¡û
>WENV183623456
OOGA01001989
[OOGA] marine metagenome; sea ice
719
794
+
Ala
TGC
[ENA]
¢þ
>WENV183680406
ORMF010176650
[ORMF] groundwater metagenome; groundwater
707
632
-
Ala
TGC
[ENA]
¢þ
>WENV183740790
PJUF01010357
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
361
436
+
Ala
TGC
[ENA]
¢þ
>WENV170015891
AZIJ01003152
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
1335
1410
+
Ala
TGC
[ENA]
¢þ
>WENV170528724
CEWJ01067526
[CEWJ] marine metagenome genome assembly TARA_128_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
838
763
-
Ala
TGC
[ENA]
¢þ
>WENV170550565
CXWF01001137
[CXWF] marine metagenome genome assembly TARA_064_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
489
564
+
Ala
TGC
[ENA]
¢þ
>WENV170554020
CXWK01042840
[CXWK] wastewater metagenome; activated sludge
1030
1105
+
Ala
TGC
[ENA]
¢þ
>C181155059
CP027526
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 [CP027526]
258841
258916
+
Ala
TGC
-
¡û
>C181155088
CP027526
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 [CP027526]
2814657
2814582
-
Ala
TGC
-
¡û
>C181155109
CP027527
Alphaproteobacteria
Magnetospirillum gryphiswaldense R3/S1 [CP027527]
258841
258916
+
Ala
TGC
-
¡û
>C181155138
CP027527
Alphaproteobacteria
Magnetospirillum gryphiswaldense R3/S1 [CP027527]
2814657
2814582
-
Ala
TGC
-
¡û
>W141564466
JIAU01000005
Alphaproteobacteria
Sphingomonas sp. URHD0057 [JIAU]
172502
172577
+
Ala
TGC
[ENA]
¡û
>W1910232014
FPEI01000006
Alphaproteobacteria
Hyphomicrobium sp. CS1BSMeth3 [FPEI]
2580975
2580900
-
Ala
TGC
[ENA]
¡û
>W1810173893
PJNW01000020
Alphaproteobacteria
Pleomorphomonas diazotrophica R5-392 [PJNW]
1804
1879
+
Ala
TGC
[ENA]
¡û
>W1810538548
QDFY01000007
Alphaproteobacteria
Sphingosinicella terrae KCTC 52780 [QDFY]
96936
97011
+
Ala
TGC
[ENA]
¡û
>ENV09002986
ADGO01000581
Compost metagenome contig00001
496
571
+
Ala
TGC
[ENA]
¡û
>W1710514037
FNAP01000038
Alphaproteobacteria
Rhodospira trueperi [FNAP]
2463
2538
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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