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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.31652 (53 seq.)
>W1710862914
LMER01000020
Actinomycetota
Angustibacter sp. Root456 [LMER]
210080
209991
-
Ser
CGA
[ENA]
¡û
>W1710866827
LMHU01000005
Actinomycetota
Terrabacter sp. Root181 [LMHU]
624477
624566
+
Ser
CGA
[ENA]
¡û
>W1710868171
LMIW01000009
Actinomycetota
Terrabacter sp. Root85 [LMIW]
448240
448329
+
Ser
CGA
[ENA]
¡û
>W1710881140
LMSW01000001
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
272090
272179
+
Ser
CGA
[ENA]
¡û
>W1710881201
LMSX01000007
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
330652
330563
-
Ser
CGA
[ENA]
¡û
>W1711074679
LSJT01000051
Actinomycetota
Dermacoccus sp. CCH2-D9 [LSJT]
35464
35553
+
Ser
CGA
[ENA]
¡û
>W1711312289
MAST01000001
Actinomycetota
Humibacillus sp. DSM 29435 [MAST]
5142
5231
+
Ser
CGA
[ENA]
¡û
>W1711517405
MLJO01000002
Actinomycetota
Intrasporangium flavum flava [MLJO]
31280
31369
+
Ser
CGA
[ENA]
¡û
>W1711664256
MQVT01000017
Actinomycetota
Dermacoccus nishinomiyaensis [MQVT]
54788
54877
+
Ser
CGA
[ENA]
¡û
>W1711664323
MQVU01000033
Actinomycetota
Dermacoccus nishinomiyaensis [MQVU]
3277
3188
-
Ser
CGA
[ENA]
¡û
>W131185540
ARTT01000012
Actinomycetota
Terracoccus sp. 273MFTsu3.1 [ARTT]
523420
523509
+
Ser
CGA
[ENA]
¡û
>WENV180291039
OBIV01001182
[OBIV] soil metagenome; Clay
685
594
-
Ser
CGA
[ENA]
¢þ
>WENV180343337
OBLK01004556
[OBLK] soil metagenome; Clay
300
210
-
Ser
CGA
[ENA]
¢þ
>WENV180377513
OBON01033002
[OBON] marine metagenome; sea water
359
448
+
Ser
CGA
[ENA]
¢þ
>WENV180690621
OCZS010014797
[OCZS] soil metagenome; soil
598
508
-
Ser
CGA
[ENA]
¢þ
>WENV181171721
OEIV010324963
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
233
146
-
Ser
CGA
[ENA]
¢þ
>WENV181188348
OEOE01093233
[OEOE] activated sludge metagenome; Activated Sludge
174
87
-
Ser
CGA
[ENA]
¢þ
>WENV181297946
OFHL01007471
[OFHL] soil metagenome; Clay
1320
1411
+
Ser
CGA
[ENA]
¢þ
>WENV181311733
OFJB01010195
[OFJB] sludge metagenome; sludge
362
273
-
Ser
CGA
[ENA]
¢þ
>WENV181372984
OFQX01015714
[OFQX] wastewater metagenome; WWTP Novara (Effluent)
1087
1000
-
Ser
CGA
[ENA]
¢þ
>WENV181387070
OFRL01038444
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
267
178
-
Ser
CGA
[ENA]
¢þ
>W141142472
AWQS01000017
Actinomycetota
Intrasporangium chromatireducens Q5-1 [AWQS]
20899
20988
+
Ser
CGA
[ENA]
¡û
>W141242930
CAIZ01000161
Actinomycetota
Phycicoccus elongatus Lp2 [CAIZ]
7661
7750
+
Ser
CGA
[ENA]
¡û
>WENV183662889
ORJL010235419
[ORJL] groundwater metagenome; groundwater
755
666
-
Ser
CGA
[ENA]
¢þ
>WENV183673407
ORJL011273757
[ORJL] groundwater metagenome; groundwater
112
23
-
Ser
CGA
[ENA]
¢þ
>WENV183675950
ORJL011572589
[ORJL] groundwater metagenome; groundwater
755
666
-
Ser
CGA
[ENA]
¢þ
>WENV183684408
ORMF010706950
[ORMF] groundwater metagenome; groundwater
394
305
-
Ser
CGA
[ENA]
¢þ
>WENV183746549
POYE01005812
[POYE] biofilm metagenome; steel pipe from biofilm reactor
3
92
+
Ser
CGA
[ENA]
¢þ
>WENV170011754
APMI01088088
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
366
455
+
Ser
CGA
[ENA]
¢þ
>WENV170554272
CXWK01058245
[CXWK] wastewater metagenome; activated sludge
27599
27510
-
Ser
CGA
[ENA]
¢þ
>WENV170571902
FLOH01000366
[FLOH] marine metagenome; water
484
395
-
Ser
CGA
[ENA]
¢þ
>C181196279
CP031145
Actinomycetota
Intrasporangium calvum C5 [CP031145]
239008
239097
+
Ser
CGA
-
¡û
>C181200528
CP031447
Actinomycetota
Austwickia chelonae LK16-18 [CP031447]
3055057
3054967
-
Ser
CGA
-
¡û
>W141564775
JIBA01000005
Actinomycetota
Intrasporangiaceae bacterium URHB0013 [JIBA]
50936
51025
+
Ser
CGA
[ENA]
¡û
>W141773549
JOIN01000007
Actinomycetota
Corynebacterium variabile [JOIN]
227265
227354
+
Ser
CGA
[ENA]
¡û
>C151039200
CP008889
Actinomycetota
Dermacoccus nishinomiyaensis M25 [CP008889]
2794871
2794960
+
Ser
CGA
[Ensembl]
¡û
>C151077128
CP011112
Actinomycetota
Luteipulveratus mongoliensis MN07-A0370 [CP011112]
4992264
4992353
+
Ser
CGA
-
¡û
>W1510071695
CDGT01000021
Actinomycetota
Mobilicoccus massiliensis SIT2 [CDGT]
165240
165327
+
Ser
CGA
[ENA]
¡û
>C11111415
CP002343
Actinomycetota
Intrasporangium calvum DSM 43043 [CP002343]
433069
433158
+
Ser
CGA
[Ensembl]
¡û
>W11138450
AEIQ01000066
Actinomycetota
Dermacoccus sp. Ellin185 [AEIQ]
8690
8779
+
Ser
CGA
[ENA]
¡û
>W1511568139
LAIR01000002
Actinomycetota
Luteipulveratus halotolerans C296001 [LAIR]
131943
131854
-
Ser
CGA
[ENA]
¡û
>W121126451
BAGZ01000009
Actinomycetota
Austwickia chelonae NBRC 105200 [BAGZ]
154807
154716
-
Ser
CGA
[ENA]
¡û
>W1610062587
BCNQ01000096
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
18348
18437
+
Ser
CGA
[ENA]
¡û
>W121124446
BAFE01000094
Actinomycetota
Mobilicoccus pelagius NBRC 104925 [BAFE]
260068
260157
+
Ser
CGA
[ENA]
¡û
>W121126660
BAHD01000107
Actinomycetota
Kineosphaera limosa NBRC 100340 [BAHD]
7373
7462
+
Ser
CGA
[ENA]
¡û
>W1610725260
LMER01000020
Actinomycetota
Angustibacter sp. Root456 [LMER]
210080
209991
-
Ser
CGA
[ENA]
¡û
>W1610729173
LMHU01000005
Actinomycetota
Terrabacter sp. Root181 [LMHU]
624477
624566
+
Ser
CGA
[ENA]
¡û
>W1610730517
LMIW01000009
Actinomycetota
Terrabacter sp. Root85 [LMIW]
448240
448329
+
Ser
CGA
[ENA]
¡û
>W1610743486
LMSW01000001
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
272090
272179
+
Ser
CGA
[ENA]
¡û
>W1610743547
LMSX01000007
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
330652
330563
-
Ser
CGA
[ENA]
¡û
>W1610913984
LSJT01000051
Actinomycetota
Dermacoccus sp. CCH2-D9 [LSJT]
35464
35553
+
Ser
CGA
[ENA]
¡û
>W1710060063
BCNQ01000096
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
18348
18437
+
Ser
CGA
[ENA]
¡û
>W1710555177
FOJD01000004
Actinomycetota
Austwickia chelonae [FOJD]
154905
154814
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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