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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.316547 (32 seq.)
>W1711055090
LRUI01000004
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
163343
163418
+
Val
TAC
[ENA]
¡û
>W1711055091
LRUI01000004
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
163551
163626
+
Val
TAC
[ENA]
¡û
>W1711055092
LRUI01000004
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
163763
163838
+
Val
TAC
[ENA]
¡û
>W1711055093
LRUI01000004
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
163976
164051
+
Val
TAC
[ENA]
¡û
>C171066107
CP017689
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [CP017689]
2230539
2230464
-
Val
TAC
-
¡û
>C171066108
CP017689
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [CP017689]
2230331
2230256
-
Val
TAC
-
¡û
>C171066109
CP017689
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [CP017689]
2230119
2230044
-
Val
TAC
-
¡û
>C171066110
CP017689
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [CP017689]
2229906
2229831
-
Val
TAC
-
¡û
>WENV182545164
OJBM01000644
[OJBM] seawater metagenome; Sea water
168
93
-
Val
TAC
[ENA]
¢þ
>WENV170781994
MAAC01005968
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
39207
39132
-
Val
TAC
[ENA]
¢þ
>WENV170781995
MAAC01005968
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
39038
38963
-
Val
TAC
[ENA]
¢þ
>WENV170781996
MAAC01005968
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
38934
38859
-
Val
TAC
[ENA]
¢þ
>WENV170781997
MAAC01005968
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
38829
38754
-
Val
TAC
[ENA]
¢þ
>C191160593
CP038493
Gammaproteobacteria
Thalassotalea sp. HSM 43 [CP038493]
544009
543934
-
Val
TAC
-
¡û
>C191160594
CP038493
Gammaproteobacteria
Thalassotalea sp. HSM 43 [CP038493]
543907
543832
-
Val
TAC
-
¡û
>C191160595
CP038493
Gammaproteobacteria
Thalassotalea sp. HSM 43 [CP038493]
543800
543725
-
Val
TAC
-
¡û
>C191160596
CP038493
Gammaproteobacteria
Thalassotalea sp. HSM 43 [CP038493]
543703
543628
-
Val
TAC
-
¡û
>W1810154298
PIZK01000007
Gammaproteobacteria
Alteromonadales bacterium alter-6D02 [PIZK]
111994
112069
+
Val
TAC
[ENA]
¡û
>W1810154299
PIZK01000007
Gammaproteobacteria
Alteromonadales bacterium alter-6D02 [PIZK]
112106
112181
+
Val
TAC
[ENA]
¡û
>W1810154300
PIZK01000007
Gammaproteobacteria
Alteromonadales bacterium alter-6D02 [PIZK]
112219
112294
+
Val
TAC
[ENA]
¡û
>W1810154301
PIZK01000007
Gammaproteobacteria
Alteromonadales bacterium alter-6D02 [PIZK]
112332
112407
+
Val
TAC
[ENA]
¡û
>W1810154360
PIZK01000039
Gammaproteobacteria
Alteromonadales bacterium alter-6D02 [PIZK]
54
129
+
Val
TAC
[ENA]
¡û
>W1511322716
JQDZ01000068
Gammaproteobacteria
Thalassotalea sp. ND16A [JQDZ]
9411
9486
+
Val
TAC
[ENA]
¡û
>W1511322717
JQDZ01000068
Gammaproteobacteria
Thalassotalea sp. ND16A [JQDZ]
9618
9693
+
Val
TAC
[ENA]
¡û
>W1511322718
JQDZ01000068
Gammaproteobacteria
Thalassotalea sp. ND16A [JQDZ]
9722
9797
+
Val
TAC
[ENA]
¡û
>W1511322719
JQDZ01000068
Gammaproteobacteria
Thalassotalea sp. ND16A [JQDZ]
9835
9910
+
Val
TAC
[ENA]
¡û
>W1511586700
LAZL01000006
Gammaproteobacteria
Catenovulum maritimum Q1 [LAZL]
1961
2036
+
Val
TAC
[ENA]
¡û
>W1511586701
LAZL01000006
Gammaproteobacteria
Catenovulum maritimum Q1 [LAZL]
2067
2142
+
Val
TAC
[ENA]
¡û
>W1610896136
LRUI01000004
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
163343
163418
+
Val
TAC
[ENA]
¡û
>W1610896137
LRUI01000004
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
163551
163626
+
Val
TAC
[ENA]
¡û
>W1610896138
LRUI01000004
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
163763
163838
+
Val
TAC
[ENA]
¡û
>W1610896139
LRUI01000004
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
163976
164051
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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