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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.316598 (38 seq.)
>W1711629771
MPPI01000004
Cyanobacteriota
Phormidesmis priestleyi ULC007 [MPPI]
53954
53882
-
Arg
CCG
[ENA]
¡û
>W1711666582
MRCC01000005
Cyanobacteriota
Chroogloeocystis siderophila 5.2 s.c.1 [MRCC]
158920
158848
-
Arg
CCG
[ENA]
¡û
>W1711979737
NDGV01000008
Cyanobacteriota
cyanobacterium TDX16 [NDGV]
37375
37303
-
Arg
CCG
[ENA]
¡û
>W131063226
ANKN01000100
Cyanobacteriota
Prochlorothrix hollandica PCC 9006 [ANKN]
53058
53130
+
Arg
CCG
[ENA]
¡û
>W131063292
ANKO01000148
Cyanobacteriota
Oscillatoria sp. PCC 10802 [ANKO]
114756
114828
+
Arg
CCG
[ENA]
¡û
>C021097
AP008231
Cyanobacteriota
Synechococcus elongatus PCC 6301 [AP008231]
1998719
1998647
-
Arg
CCG
[Ensembl]
¡û
>C021140
CP000100
Cyanobacteriota
Synechococcus elongatus PCC 7942 = FACHB-805 [CP000100]
2318309
2318381
+
Arg
CCG
[Ensembl]
¡û
>w021640
AAVU01000038
Cyanobacteriota
Lyngbya sp. PCC 8106 [AAVU]
31964
31887
-
Arg
CCG
[ENA]
¡û
>W141022508
AJTX01000497
Cyanobacteriota
Prochlorothrix hollandica PCC 9006 [AJTX]
902
830
-
Arg
CCG
[ENA]
¡û
>W141038468
ALVV02000060
Cyanobacteriota
Leptolyngbya sp. PCC 6406 [ALVV]
171990
171918
-
Arg
CCG
[ENA]
¡û
>W141091944
AUZM01000020
Cyanobacteriota
Lyngbya aestuarii BL J [AUZM]
40832
40906
+
Arg
CCG
[ENA]
¡û
>W08011546
ABVJ01000012
Cyanobacteriota
Cyanothece sp. PCC 7425 [ABVJ]
33875
33800
-
Arg
CCG
[ENA]
¡û
>W141240112
CAFN01000006
Cyanobacteriota
Limnospira indica PCC 8005 [CAFN]
533
461
-
Arg
CCG
[ENA]
¡û
>C08000550
CP000828
Cyanobacteriota
Acaryochloris marina MBIC11017 [CP000828]
5884305
5884378
+
Arg
CCG
[Ensembl]
¡û
>ENV08002238
ABPP01005283
microbial mat metagenome; Guerrero Negro Hypersaline Mat 01; altitude 310m AMSL; sample depth 1m below water level, 0-1mm depth into the mat
637
565
-
Arg
CCG
[ENA]
¡û
>WENV170597803
FUWD010015051
[FUWD] metagenome; unknown
90
163
+
Arg
CCG
[ENA]
¢þ
>C181169669
CP028914
Cyanobacteriota
Arthrospira sp. TJSD092 [CP028914]
4434310
4434382
+
Arg
CCG
-
¡û
>C191099569
CP033061
Cyanobacteriota
Synechococcus elongatus UTEX 3055 [CP033061]
1546722
1546650
-
Arg
CCG
-
¡û
>W141701079
JMKF01000035
Cyanobacteriota
[Leptolyngbya] sp. JSC-1 JSC-1 [JMKF]
79212
79140
-
Arg
CCG
[ENA]
¡û
>W09101105
AADZ01000001
Cyanobacteriota
Synechococcus elongatus PCC 7942 [AADZ]
1606931
1607003
+
Arg
CCG
[ENA]
¡û
>C09103575
CP001344
Cyanobacteriota
Cyanothece sp. PCC 7425 [CP001344]
1300203
1300278
+
Arg
CCG
[Ensembl]
¡û
>W1910812546
MVDI01000002
Cyanobacteriota
Chroococcidiopsis sp. TS-821 [MVDI]
519254
519182
-
Arg
CCG
[ENA]
¡û
>W1910976651
NKFP01000006
Cyanobacteriota
Leptolyngbya ohadii IS1 [NKFP]
139604
139676
+
Arg
CCG
[ENA]
¡û
>W1810185591
PKGD01000488
Cyanobacteriota
Arthrospira sp. O9.13F [PKGD]
2498
2570
+
Arg
CCG
[ENA]
¡û
>W1810296717
PTJN01000088
Cyanobacteriota
Gloeocapsopsis dulcis AAB1 [PTJN]
7111
7039
-
Arg
CCG
[ENA]
¡û
>W1810366199
PVWD01000148
Cyanobacteriota
filamentous cyanobacterium CCP2 [PVWD]
11067
10993
-
Arg
CCG
[ENA]
¡û
>W1810366231
PVWE01000135
Cyanobacteriota
filamentous cyanobacterium CCP1 [PVWE]
2569
2495
-
Arg
CCG
[ENA]
¡û
>W1810366244
PVWG01000003
Cyanobacteriota
Phormidesmis priestleyi ULC007 [PVWG]
122897
122825
-
Arg
CCG
[ENA]
¡û
>SRA1017758
SRR035082.192532
454 Sequencing (SRP001803)
291
219
-
Arg
CCG
[SRA]
>C151009173
CP006471
Cyanobacteriota
Synechococcus elongatus UTEX 2973 [CP006471]
946169
946097
-
Arg
CCG
[Ensembl]
¡û
>W1511108026
JJML01000063
Cyanobacteriota
Neosynechococcus sphagnicola sy1 CAUP A 1101 [JJML]
17911
17986
+
Arg
CCG
[ENA]
¡û
>W1511585662
LAYT01000116
Cyanobacteriota
Arthrospira sp. TJSD091 [LAYT]
19669
19741
+
Arg
CCG
[ENA]
¡û
>W11160134
AFEJ01000296
Cyanobacteriota
Acaryochloris sp. CCMEE 5410 [AFEJ]
2504
2432
-
Arg
CCG
[ENA]
¡û
>C161002771
AP017367
Cyanobacteriota
Leptolyngbya sp. O-77 [AP017367]
2288291
2288363
+
Arg
CCG
[Ensembl]
¡û
>C161049415
CP013008
Cyanobacteriota
Arthrospira platensis YZ [CP013008]
2316281
2316209
-
Arg
CCG
-
¡û
>C161103173
FO818640
Cyanobacteriota
Limnospira indica PCC 8005 [FO818640]
1288207
1288135
-
Arg
CCG
-
¡û
>C131004402
CP003591
Cyanobacteriota
Geitlerinema sp. PCC 7407 [CP003591]
3976825
3976751
-
Arg
CCG
[Ensembl]
¡û
>C131004881
CP003630
Cyanobacteriota
Allocoleopsis franciscana PCC 7113 [CP003630]
7068124
7068199
+
Arg
CCG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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