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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.316927 (10 seq.)
>WENV181228606
OFEH01000406
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
10721
10648
-
Pro
CGG
[ENA]
¢þ
>WENV181407401
OGCG01023237
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
973
1046
+
Pro
CGG
[ENA]
¢þ
>WENV181407415
OGCG01024199
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
140
68
-
Pro
CGG
[ENA]
¢þ
>C08005608
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
10845
10773
-
Pro
CGG
[Ensembl]
¡û
>C151003677
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
10814
10741
-
Pro
CGG
[Ensembl]
¡û
>C151003721
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
10850
10777
-
Pro
CGG
[Ensembl]
¡û
>W10115189
ADJO01000002
Aquificota
Hydrogenobaculum sp. SN [ADJO]
47950
47877
-
Pro
CGG
[ENA]
¡û
>W11118775
ADJO01000002
Aquificota
Hydrogenobaculum sp. SN [ADJO]
47950
47877
-
Pro
CGG
[ENA]
¡û
>C131013416
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
10849
10776
-
Pro
CGG
[Ensembl]
¡û
>C131013728
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
10811
10738
-
Pro
CGG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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