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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.317385 (41 seq.)
>W1712017273
NESR01000007
Bacillota
Kurthia gibsonii [NESR]
117949
117877
-
Phe
GAA
[ENA]
¡û
>W1712017277
NESR01000007
Bacillota
Kurthia gibsonii [NESR]
108486
108414
-
Phe
GAA
[ENA]
¡û
>WENV181203340
OERV01000668
[OERV] metagenome; water of meat washing
3705
3777
+
Phe
GAA
[ENA]
¢þ
>C191056121
CP028083
Bacillota
Lysinibacillus sp. SGAir0095 [CP028083]
269273
269348
+
Phe
GAA
-
¡û
>C191056172
CP028083
Bacillota
Lysinibacillus sp. SGAir0095 [CP028083]
2964639
2964564
-
Phe
GAA
-
¡û
>C191056191
CP028083
Bacillota
Lysinibacillus sp. SGAir0095 [CP028083]
2962671
2962596
-
Phe
GAA
-
¡û
>C191211378
LR134474
Bacillota
Kurthia zopfii NCTC404 [LR134474]
1341314
1341389
+
Phe
GAA
-
¡û
>C191211393
LR134474
Bacillota
Kurthia zopfii NCTC404 [LR134474]
1914363
1914435
+
Phe
GAA
-
¡û
>C191211396
LR134474
Bacillota
Kurthia zopfii NCTC404 [LR134474]
1929908
1929980
+
Phe
GAA
-
¡û
>C191211410
LR134474
Bacillota
Kurthia zopfii NCTC404 [LR134474]
2939944
2939869
-
Phe
GAA
-
¡û
>W1910183827
BJOB01000078
Bacillota
Kurthia gibsonii NBRC 15534 [BJOB]
5
77
+
Phe
GAA
[ENA]
¡û
>W1910940575
NJAS01000001
Bacillota
Rummeliibacillus pycnus DSM 15030 [NJAS]
1693
1768
+
Phe
GAA
[ENA]
¡û
>W1910940587
NJAS01000001
Bacillota
Rummeliibacillus pycnus DSM 15030 [NJAS]
1198854
1198782
-
Phe
GAA
[ENA]
¡û
>W1910940614
NJAS01000002
Bacillota
Rummeliibacillus pycnus DSM 15030 [NJAS]
2294110
2294185
+
Phe
GAA
[ENA]
¡û
>W1910940641
NJAS01000002
Bacillota
Rummeliibacillus pycnus DSM 15030 [NJAS]
1457129
1457054
-
Phe
GAA
[ENA]
¡û
>W1910940655
NJAS01000002
Bacillota
Rummeliibacillus pycnus DSM 15030 [NJAS]
1118709
1118634
-
Phe
GAA
[ENA]
¡û
>W1910940666
NJAS01000002
Bacillota
Rummeliibacillus pycnus DSM 15030 [NJAS]
449919
449844
-
Phe
GAA
[ENA]
¡û
>W1911676163
QGPZ01000069
Bacillota
Rummeliibacillus sp. TYF005 [QGPZ]
10625
10551
-
Phe
GAA
[ENA]
¡û
>W1911760385
QWUA01000006
Bacillota
Rummeliibacillus sp. POC4 [QWUA]
830
905
+
Phe
GAA
[ENA]
¡û
>W1911760398
QWUA01000017
Bacillota
Rummeliibacillus sp. POC4 [QWUA]
515
440
-
Phe
GAA
[ENA]
¡û
>W1911760409
QWUA01000023
Bacillota
Rummeliibacillus sp. POC4 [QWUA]
41821
41747
-
Phe
GAA
[ENA]
¡û
>W1911760426
QWUA01000135
Bacillota
Rummeliibacillus sp. POC4 [QWUA]
1853
1778
-
Phe
GAA
[ENA]
¡û
>W1911760439
QWUA01000145
Bacillota
Rummeliibacillus sp. POC4 [QWUA]
1054
1129
+
Phe
GAA
[ENA]
¡û
>W1911760456
QWUA01000157
Bacillota
Rummeliibacillus sp. POC4 [QWUA]
561
486
-
Phe
GAA
[ENA]
¡û
>W1911818004
QZNE01000024
Bacillota
Kurthia gibsonii B83 [QZNE]
178
250
+
Phe
GAA
[ENA]
¡û
>W1911818011
QZNE01000033
Bacillota
Kurthia gibsonii B83 [QZNE]
9411
9339
-
Phe
GAA
[ENA]
¡û
>W1810591521
QFVR01000003
Bacillota
Kurthia sibirica ATCC 49154 [QFVR]
918
846
-
Phe
GAA
[ENA]
¡û
>W1810591545
QFVR01000016
Bacillota
Kurthia sibirica ATCC 49154 [QFVR]
71410
71335
-
Phe
GAA
[ENA]
¡û
>W1810591559
QFVR01000028
Bacillota
Kurthia sibirica ATCC 49154 [QFVR]
23452
23380
-
Phe
GAA
[ENA]
¡û
>W1810591564
QFVR01000028
Bacillota
Kurthia sibirica ATCC 49154 [QFVR]
22060
21988
-
Phe
GAA
[ENA]
¡û
>W1810591566
QFVR01000029
Bacillota
Kurthia sibirica ATCC 49154 [QFVR]
29416
29341
-
Phe
GAA
[ENA]
¡û
>W1810591598
QFVS01000002
Bacillota
Kurthia zopfii ATCC 33403 [QFVS]
125074
124999
-
Phe
GAA
[ENA]
¡û
>W1810591618
QFVS01000013
Bacillota
Kurthia zopfii ATCC 33403 [QFVS]
3875
3947
+
Phe
GAA
[ENA]
¡û
>W1810591632
QFVS01000033
Bacillota
Kurthia zopfii ATCC 33403 [QFVS]
34599
34671
+
Phe
GAA
[ENA]
¡û
>ENV09003035
ADGO01002002
Compost metagenome contig00001
520
595
+
Phe
GAA
[ENA]
¡û
>C161053283
CP013217
Bacillota
Kurthia sp. 11kri321 [CP013217]
1664417
1664345
-
Phe
GAA
[Ensembl]
¡û
>C161053287
CP013217
Bacillota
Kurthia sp. 11kri321 [CP013217]
1657617
1657545
-
Phe
GAA
[Ensembl]
¡û
>C161077958
CP014806
Bacillota
Rummeliibacillus stabekisii PP9 [CP014806]
3162250
3162325
+
Phe
GAA
-
¡û
>C161077988
CP014806
Bacillota
Rummeliibacillus stabekisii PP9 [CP014806]
2186934
2186859
-
Phe
GAA
-
¡û
>C161078011
CP014806
Bacillota
Rummeliibacillus stabekisii PP9 [CP014806]
1947574
1947499
-
Phe
GAA
-
¡û
>C161078026
CP014806
Bacillota
Rummeliibacillus stabekisii PP9 [CP014806]
1652574
1652499
-
Phe
GAA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK