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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.317785 (132 seq.)
>W1710925464
LODI01000018
Gammaproteobacteria
Pseudoalteromonas sp. H71 [LODI]
9679
9604
-
Thr
GGT
[ENA]
¡û
>W1710925597
LODJ01000011
Gammaproteobacteria
Pseudoalteromonas sp. 13-15 [LODJ]
76166
76241
+
Thr
GGT
[ENA]
¡û
>W1710925619
LODK01000010
Gammaproteobacteria
Pseudoalteromonas sp. H100 [LODK]
299
224
-
Thr
GGT
[ENA]
¡û
>W1710927160
LOFG01000015
Gammaproteobacteria
Pseudoalteromonas sp. H103 [LOFG]
1678
1603
-
Thr
GGT
[ENA]
¡û
>W1711696384
MSJT02000123
Gammaproteobacteria
Shigella boydii [MSJT]
19701
19626
-
Thr
GGT
[ENA]
¡û
>W1711724449
MTQD01000019
Gammaproteobacteria
Pseudoalteromonas sp. EB27 [MTQD]
331
256
-
Thr
GGT
[ENA]
¡û
>W1711807149
MXER01000126
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Braenderup [MXER]
433
358
-
Thr
GGT
[ENA]
¡û
>W1711811837
MXHJ01000029
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Muenster [MXHJ]
2147
2072
-
Thr
GGT
[ENA]
¡û
>W1711824737
MXOM01000029
Gammaproteobacteria
Salmonella enterica subsp. houtenae serovar 16:z4 [MXOM]
3911
3986
+
Thr
GGT
[ENA]
¡û
>W1711856040
MYGX01000046
Gammaproteobacteria
Salmonella enterica [MYGX]
3898
3973
+
Thr
GGT
[ENA]
¡û
>W1711856104
MYGY01000044
Gammaproteobacteria
Salmonella enterica [MYGY]
34147
34072
-
Thr
GGT
[ENA]
¡û
>W1711856946
MYHK01000255
Gammaproteobacteria
Salmonella enterica [MYHK]
277
202
-
Thr
GGT
[ENA]
¡û
>W1711880155
MYUB01000812
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Anatum [MYUB]
1067
1142
+
Thr
GGT
[ENA]
¡û
>W1711884881
MYWU01000216
Gammaproteobacteria
Salmonella enterica [MYWU]
400
325
-
Thr
GGT
[ENA]
¡û
>W131136505
AQBR01000110
Gammaproteobacteria
Escherichia coli P0305260.8 [AQBR]
222
297
+
Thr
GGT
[ENA]
¡û
>W131051925
AMYA01000038
Gammaproteobacteria
Pseudoalteromonas sp. Bsw20308 [AMYA]
43871
43946
+
Thr
GGT
[ENA]
¡û
>C171097343
CP019628
Gammaproteobacteria
Pseudoalteromonas aliena EH1 [CP019628]
1689014
1688939
-
Thr
GGT
-
¡û
>C016437
CR954246
Gammaproteobacteria
Pseudoalteromonas translucida TAC125 [CR954246, CR954247]
3080778
3080703
-
Thr
GGT
[Ensembl]
¡û
>w021538
AAVS01000022
Gammaproteobacteria
Alteromonadales bacterium TW-7 [AAVS]
70043
70120
+
Thr
GGT
[ENA]
¡û
>WENV180563541
OCLC01074118
[OCLC] human gut metagenome; human gut
188
263
+
Thr
GGT
[ENA]
¢þ
>W141086570
AUTI01000443
Gammaproteobacteria
Pseudoalteromonas sp. TB25 TB25 [AUTI]
1346
1271
-
Thr
GGT
[ENA]
¡û
>W141086639
AUTJ01000181
Gammaproteobacteria
Pseudoalteromonas sp. TB13 TB13 [AUTJ]
1389
1314
-
Thr
GGT
[ENA]
¡û
>W141086754
AUTK01000524
Gammaproteobacteria
Pseudoalteromonas sp. AC163 AC163 [AUTK]
1346
1271
-
Thr
GGT
[ENA]
¡û
>W141086847
AUTL01000273
Gammaproteobacteria
Pseudoalteromonas sp. TAE79 TAE79 [AUTL]
16767
16842
+
Thr
GGT
[ENA]
¡û
>W141086888
AUTM01000130
Gammaproteobacteria
Pseudoalteromonas sp. TAE80 TAE80 [AUTM]
18507
18582
+
Thr
GGT
[ENA]
¡û
>W141086999
AUTN01000119
Gammaproteobacteria
Pseudoalteromonas sp. TAE56 TAE56 [AUTN]
82420
82495
+
Thr
GGT
[ENA]
¡û
>W141087137
AUTP01000119
Gammaproteobacteria
Pseudoalteromonas sp. TAB23 TAB23 [AUTP]
19906
19981
+
Thr
GGT
[ENA]
¡û
>W141087258
AUTQ01000113
Gammaproteobacteria
Pseudoalteromonas sp. TB64 TB64 [AUTQ]
1421
1346
-
Thr
GGT
[ENA]
¡û
>W141087336
AUTR01000010
Gammaproteobacteria
Pseudoalteromonas sp. S8-8 [AUTR]
1390
1315
-
Thr
GGT
[ENA]
¡û
>W141087441
AUTS01000009
Gammaproteobacteria
Pseudoalteromonas sp. S8-38 [AUTS]
1390
1315
-
Thr
GGT
[ENA]
¡û
>WENV181228894
OFEI01000273
[OFEI] insect metagenome; insect
4443
4518
+
Thr
GGT
[ENA]
¢þ
>WENV181232047
OFEL01000558
[OFEL] insect metagenome; insect
4442
4517
+
Thr
GGT
[ENA]
¢þ
>WENV181428480
OGCV01002829
[OGCV] metagenome; Human gut stool
180
105
-
Thr
GGT
[ENA]
¢þ
>WENV181439124
OGDL01001096
[OGDL] metagenome; Human gut stool
1663
1588
-
Thr
GGT
[ENA]
¢þ
>WENV181443448
OGDP01009607
[OGDP] metagenome; Human gut stool
1512
1587
+
Thr
GGT
[ENA]
¢þ
>WENV181491142
OGFX01002254
[OGFX] metagenome; Human gut stool
788
863
+
Thr
GGT
[ENA]
¢þ
>WENV181548981
OGIK01004759
[OGIK] metagenome; Human gut stool
2611
2686
+
Thr
GGT
[ENA]
¢þ
>WENV181624003
OGMJ01001097
[OGMJ] metagenome; Human gut stool
7341
7416
+
Thr
GGT
[ENA]
¢þ
>WENV181633525
OGMV01003420
[OGMV] metagenome; Human gut stool
3029
2954
-
Thr
GGT
[ENA]
¢þ
>WENV181766545
OGQZ01002254
[OGQZ] human gut metagenome; faeces
3881
3956
+
Thr
GGT
[ENA]
¢þ
>WENV181929518
OGYO01030101
[OGYO] human gut metagenome; faeces
1476
1551
+
Thr
GGT
[ENA]
¢þ
>WENV181998992
OHAV01016415
[OHAV] human gut metagenome; feces
840
915
+
Thr
GGT
[ENA]
¢þ
>WENV182196953
OHPG01001894
[OHPG] human gut metagenome; feces
3542
3617
+
Thr
GGT
[ENA]
¢þ
>WENV182253624
OHTA01010046
[OHTA] human gut metagenome; feces
569
644
+
Thr
GGT
[ENA]
¢þ
>WENV182445181
OIKV01000447
[OIKV] human gut metagenome; human gut
1788
1863
+
Thr
GGT
[ENA]
¢þ
>WENV182474916
OIPX01008584
[OIPX] human gut metagenome; human gut
429
504
+
Thr
GGT
[ENA]
¢þ
>WENV182491535
OISK01006600
[OISK] human gut metagenome; human gut
181
106
-
Thr
GGT
[ENA]
¢þ
>WENV182492016
OISP01003857
[OISP] human gut metagenome; human gut
969
1044
+
Thr
GGT
[ENA]
¢þ
>WENV182498479
OITO01001382
[OITO] human gut metagenome; human gut
1711
1636
-
Thr
GGT
[ENA]
¢þ
>WENV182542267
OJAX01000935
[OJAX] seawater metagenome; Sea water
165
240
+
Thr
GGT
[ENA]
¢þ
>WENV182551606
OJCE01002061
[OJCE] seawater metagenome; Sea water
570
645
+
Thr
GGT
[ENA]
¢þ
>WENV182551628
OJCF01000170
[OJCF] seawater metagenome; Sea water
1360
1285
-
Thr
GGT
[ENA]
¢þ
>WENV182552456
OJCK01000163
[OJCK] seawater metagenome; Sea water
33561
33636
+
Thr
GGT
[ENA]
¢þ
>WENV182554605
OJCW01000103
[OJCW] seawater metagenome; Sea water
260
185
-
Thr
GGT
[ENA]
¢þ
>WENV182555609
OJDC01004599
[OJDC] seawater metagenome; Sea water
998
923
-
Thr
GGT
[ENA]
¢þ
>WENV182558183
OJDL01011672
[OJDL] seawater metagenome; Sea water
1093
1018
-
Thr
GGT
[ENA]
¢þ
>WENV182558811
OJDN01004291
[OJDN] seawater metagenome; Sea water
2535
2610
+
Thr
GGT
[ENA]
¢þ
>WENV182559034
OJDO01000074
[OJDO] seawater metagenome; Sea water
260
185
-
Thr
GGT
[ENA]
¢þ
>WENV182559731
OJDQ01002078
[OJDQ] seawater metagenome; Sea water
3218
3143
-
Thr
GGT
[ENA]
¢þ
>WENV182565132
OJEG01003878
[OJEG] seawater metagenome; Sea water
381
456
+
Thr
GGT
[ENA]
¢þ
>WENV182565842
OJEI01000159
[OJEI] seawater metagenome; Sea water
1347
1272
-
Thr
GGT
[ENA]
¢þ
>WENV182566186
OJEJ01000540
[OJEJ] seawater metagenome; Sea water
10193
10268
+
Thr
GGT
[ENA]
¢þ
>WENV182567758
OJEP01000142
[OJEP] seawater metagenome; Sea water
36994
37069
+
Thr
GGT
[ENA]
¢þ
>WENV182568554
OJEV01002144
[OJEV] seawater metagenome; Sea water
1371
1296
-
Thr
GGT
[ENA]
¢þ
>WENV182572707
OJFM01005583
[OJFM] seawater metagenome; Sea water
570
645
+
Thr
GGT
[ENA]
¢þ
>WENV182572971
OJFO01009695
[OJFO] seawater metagenome; Sea water
260
185
-
Thr
GGT
[ENA]
¢þ
>WENV182575108
OJFT01001538
[OJFT] seawater metagenome; Sea water
570
645
+
Thr
GGT
[ENA]
¢þ
>WENV182575125
OJFU01000035
[OJFU] seawater metagenome; Sea water
260
185
-
Thr
GGT
[ENA]
¢þ
>WENV182577471
OJGF01002235
[OJGF] seawater metagenome; Sea water
1411
1336
-
Thr
GGT
[ENA]
¢þ
>WENV182577555
OJGG01004302
[OJGG] seawater metagenome; Sea water
1014
939
-
Thr
GGT
[ENA]
¢þ
>WENV182577662
OJGH01000356
[OJGH] seawater metagenome; Sea water
10340
10415
+
Thr
GGT
[ENA]
¢þ
>WENV182585455
OJHH01026805
[OJHH] seawater metagenome; Sea water
596
671
+
Thr
GGT
[ENA]
¢þ
>WENV182589627
OJIE01000906
[OJIE] seawater metagenome; Sea water
852
927
+
Thr
GGT
[ENA]
¢þ
>WENV182589631
OJIE01000906
[OJIE] seawater metagenome; Sea water
259
184
-
Thr
GGT
[ENA]
¢þ
>WENV182591302
OJIL01013390
[OJIL] seawater metagenome; Sea water
570
645
+
Thr
GGT
[ENA]
¢þ
>WENV182593230
OJIT01009167
[OJIT] seawater metagenome; Sea water
81
156
+
Thr
GGT
[ENA]
¢þ
>WENV182646433
OJMA01036075
[OJMA] metagenome; surface
540
615
+
Thr
GGT
[ENA]
¢þ
>WENV182806367
OJVN01001923
[OJVN] human gut metagenome; human gut
1055
1130
+
Thr
GGT
[ENA]
¢þ
>WENV182838694
OKGV01000007
[OKGV] human gut metagenome; human gut
6517
6442
-
Thr
GGT
[ENA]
¢þ
>WENV182949283
OKVP01031848
[OKVP] human gut metagenome; human gut
83
158
+
Thr
GGT
[ENA]
¢þ
>WENV182982221
OKZB01000677
[OKZB] human gut metagenome; human gut
1262
1337
+
Thr
GGT
[ENA]
¢þ
>WENV183011881
OLEA01004536
[OLEA] human gut metagenome; human gut
181
106
-
Thr
GGT
[ENA]
¢þ
>WENV183018287
OLEY01002496
[OLEY] human gut metagenome; human gut
181
106
-
Thr
GGT
[ENA]
¢þ
>WENV183057634
OLHM01000069
[OLHM] seawater metagenome; Sea water
38534
38609
+
Thr
GGT
[ENA]
¢þ
>WENV183057997
OLHN01000463
[OLHN] seawater metagenome; Sea water
11314
11389
+
Thr
GGT
[ENA]
¢þ
>WENV183215762
OLQG01013983
[OLQG] human gut metagenome; faeces
108
33
-
Thr
GGT
[ENA]
¢þ
>WENV183241153
OLRA01058133
[OLRA] human gut metagenome; faeces
180
105
-
Thr
GGT
[ENA]
¢þ
>WENV183273540
OLRX01012836
[OLRX] human gut metagenome; faeces
2453
2528
+
Thr
GGT
[ENA]
¢þ
>WENV183313082
OLVP01005576
[OLVP] human gut metagenome; faeces
3867
3942
+
Thr
GGT
[ENA]
¢þ
>WENV183408385
OMAD01003832
[OMAD] human gut metagenome; feces
2885
2960
+
Thr
GGT
[ENA]
¢þ
>WENV183621277
OOFT01036715
[OOFT] marine metagenome; sea ice
78
153
+
Thr
GGT
[ENA]
¢þ
>WENV170024679
BCQL01096750
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
355
430
+
Thr
GGT
[ENA]
¢þ
>C181010113
CP011025
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [CP011025, CP011026]
130116
130191
+
Thr
GGT
-
¡û
>C181010562
CP011036
Gammaproteobacteria
Pseudoalteromonas nigrifaciens KMM 661 [CP011036, CP011037]
3386538
3386463
-
Thr
GGT
-
¡û
>C181036673
CP019162
Gammaproteobacteria
Pseudoalteromonas sp. 13-15 [CP019162, CP019163]
2600779
2600854
+
Thr
GGT
-
¡û
>C181084519
CP023558
Gammaproteobacteria
Pseudoalteromonas marina ECSMB14103 [CP023558]
3334337
3334262
-
Thr
GGT
-
¡û
>C191051510
CP027523
Gammaproteobacteria
Pseudoalteromonas carrageenovora KCTC 22325 [CP027523, CP027524]
126933
127008
+
Thr
GGT
-
¡û
>C191179338
CP040558
Gammaproteobacteria
Pseudoalteromonas distincta 16-SW-7 [CP040558]
3583414
3583489
+
Thr
GGT
-
¡û
>C191214368
LR134531
Gammaproteobacteria
Pragia fontium NCTC12284 [LR134531]
3535188
3535113
-
Thr
GGT
-
¡û
>W141621766
JJNY01000026
Gammaproteobacteria
Pseudoalteromonas sp. S3431 [JJNY]
225
150
-
Thr
GGT
[ENA]
¡û
>W141621892
JJNZ01000063
Gammaproteobacteria
Pseudoalteromonas fuliginea citrea [JJNZ]
266
191
-
Thr
GGT
[ENA]
¡û
>W1910072793
BFIJ01000051
Gammaproteobacteria
Escherichia coli ECSC041 [BFIJ]
353857
353782
-
Thr
GGT
[ENA]
¡û
>W1910230335
FOLW01000019
Gammaproteobacteria
Pragia fontium DSM 5563 = ATCC 49100 [FOLW]
14197
14122
-
Thr
GGT
[ENA]
¡û
>W1910377971
FUKV01000035
Gammaproteobacteria
Pseudoalteromonas sp. JB197 [FUKV]
38678
38753
+
Thr
GGT
[ENA]
¡û
>W1910938001
NIYR01000140
Gammaproteobacteria
Shigella flexneri ESBL-CM33 [NIYR]
120
195
+
Thr
GGT
[ENA]
¡û
>W1810155629
PJAV01000116
Gammaproteobacteria
Pseudoalteromonas sp. 78C3 [PJAV]
366
291
-
Thr
GGT
[ENA]
¡û
>W1810156629
PJBK01000089
Gammaproteobacteria
Pseudoalteromonas sp. GutCa3 [PJBK]
204
129
-
Thr
GGT
[ENA]
¡û
>W1810157033
PJBQ01000064
Gammaproteobacteria
Pseudoalteromonas arctica MelAa3 [PJBQ]
18452
18527
+
Thr
GGT
[ENA]
¡û
>W1810157114
PJBR01000086
Gammaproteobacteria
Pseudoalteromonas sp. MelDa3 [PJBR]
18438
18513
+
Thr
GGT
[ENA]
¡û
>W1510463057
CQBR01000018
Gammaproteobacteria
Yersinia frederiksenii FCF343 [CQBR]
3312
3387
+
Thr
GGT
[ENA]
¡û
>W1511375762
JSNJ01000192
Gammaproteobacteria
Escherichia coli upec-141 [JSNJ]
3817
3892
+
Thr
GGT
[ENA]
¡û
>W1511399100
JTDZ01000030
Gammaproteobacteria
Pseudoalteromonas elyakovii NCIMB 2033 = ATCC BAA-314 [JTDZ]
114546
114621
+
Thr
GGT
[ENA]
¡û
>W11121980
ADOP01000017
Gammaproteobacteria
Pseudoalteromonas distincta ANT/505 [ADOP]
1367
1292
-
Thr
GGT
[ENA]
¡û
>W1511478097
JWGY01000015
Gammaproteobacteria
Pseudoalteromonas sp. ECSMB14103 [JWGY]
69119
69194
+
Thr
GGT
[ENA]
¡û
>W1511479569
JWIG01000021
Gammaproteobacteria
Pseudoalteromonas distincta ATCC 700518 [JWIG]
165586
165511
-
Thr
GGT
[ENA]
¡û
>W1511518619
JXYD01000065
Gammaproteobacteria
Pseudoalteromonas fuliginea S2292 [JXYD]
36352
36427
+
Thr
GGT
[ENA]
¡û
>C161051992
CP013138
Gammaproteobacteria
Pseudoalteromonas sp. Bsw20308 BSW20308 [CP013138]
3827352
3827277
-
Thr
GGT
-
¡û
>W121024830
AHBY01000046
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [AHBY]
729
654
-
Thr
GGT
[ENA]
¡û
>W121025141
AHCB01000017
Gammaproteobacteria
Pseudoalteromonas marina mano4 [AHCB]
528
453
-
Thr
GGT
[ENA]
¡û
>W121123073
BADT01000256
Gammaproteobacteria
Pseudoalteromonas sp. BSi20652 [BADT]
138
213
+
Thr
GGT
[ENA]
¡û
>W121123152
BADV01000004
Gammaproteobacteria
Pseudoalteromonas sp. BSi20429 [BADV]
89030
89105
+
Thr
GGT
[ENA]
¡û
>W121123285
BADX01000014
Gammaproteobacteria
Pseudoalteromonas sp. BSi20480 [BADX]
577
652
+
Thr
GGT
[ENA]
¡û
>W121123361
BADY01000079
Gammaproteobacteria
Pseudoalteromonas sp. BSi20495 [BADY]
70830
70905
+
Thr
GGT
[ENA]
¡û
>W121126296
BAGV01000101
Gammaproteobacteria
Enterobacteriaceae bacterium B14 [BAGV]
4142
4217
+
Thr
GGT
[ENA]
¡û
>W1610620901
LHPH01000032
Gammaproteobacteria
Pseudoalteromonas porphyrae [LHPH]
1125
1050
-
Thr
GGT
[ENA]
¡û
>W1610635641
LITL01000034
Gammaproteobacteria
Pseudoalteromonas porphyrae [LITL]
1126
1051
-
Thr
GGT
[ENA]
¡û
>W1610783110
LODI01000018
Gammaproteobacteria
Pseudoalteromonas sp. H71 [LODI]
9679
9604
-
Thr
GGT
[ENA]
¡û
>W1610783265
LODK01000010
Gammaproteobacteria
Pseudoalteromonas sp. H100 [LODK]
299
224
-
Thr
GGT
[ENA]
¡û
>W1730036760
MXSN01000002
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Javiana [MXSN]
619477
619552
+
Thr
GGT
[ENA]
¡û
>W1710594347
FSRF01000001
Gammaproteobacteria
Pseudoalteromonas marina 13-15 [FSRF]
2600779
2600854
+
Thr
GGT
[ENA]
¡û
>W1710748768
LHPH01000032
Gammaproteobacteria
Pseudoalteromonas porphyrae [LHPH]
1125
1050
-
Thr
GGT
[ENA]
¡û
>W1710770269
LITL01000034
Gammaproteobacteria
Pseudoalteromonas porphyrae [LITL]
1126
1051
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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