This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.317918 (102 seq.)
>W131010977
AHYW01000020
Bacillota
Enterococcus columbae DSM 7374 = ATCC 51263 [AHYW]
978
904
-
Lys
TTT
[ENA]
¡û
>W131010990
AHYW01000029
Bacillota
Enterococcus columbae DSM 7374 = ATCC 51263 [AHYW]
181846
181772
-
Lys
TTT
[ENA]
¡û
>W131011010
AHYX01000007
Bacillota
Enterococcus sulfureus ATCC 49903 [AHYX]
1004
930
-
Lys
TTT
[ENA]
¡û
>W131011046
AHYX01000018
Bacillota
Enterococcus sulfureus ATCC 49903 [AHYX]
4986
5060
+
Lys
TTT
[ENA]
¡û
>W131027619
AJAM01000009
Bacillota
Enterococcus casseliflavus ATCC 49996 [AJAM]
80879
80953
+
Lys
TTT
[ENA]
¡û
>W131027628
AJAM01000011
Bacillota
Enterococcus casseliflavus ATCC 49996 [AJAM]
3369
3443
+
Lys
TTT
[ENA]
¡û
>W131165451
ARBO01000047
Bacillota
Enterococcus cecorum DSM 20682 = ATCC 43198 [ARBO]
176
250
+
Lys
TTT
[ENA]
¡û
>W131201830
ASWI01000001
Bacillota
Enterococcus cecorum DSM 20682 = ATCC 43198 [ASWI]
109
183
+
Lys
TTT
[ENA]
¡û
>W131201856
ASWI01000003
Bacillota
Enterococcus cecorum DSM 20682 = ATCC 43198 [ASWI]
235031
235105
+
Lys
TTT
[ENA]
¡û
>W131202095
ASWN01000003
Bacillota
Enterococcus saccharolyticus ATCC 43076 [ASWN]
127
201
+
Lys
TTT
[ENA]
¡û
>W131202130
ASWO01000001
Bacillota
Enterococcus sulfureus ATCC 49903 [ASWO]
792316
792242
-
Lys
TTT
[ENA]
¡û
>W131202161
ASWO01000004
Bacillota
Enterococcus sulfureus ATCC 49903 [ASWO]
87800
87726
-
Lys
TTT
[ENA]
¡û
>W131208686
ATIC01000026
Bacillota
Enterococcus casseliflavus 14-MB-W-14 [ATIC]
32
106
+
Lys
TTT
[ENA]
¡û
>W131208712
ATID01000033
Bacillota
Enterococcus faecium 13.SD.W.09 [ATID]
36
110
+
Lys
TTT
[ENA]
¡û
>W131209127
ATIM01000126
Bacillota
Enterococcus faecalis 06-MB-DW-09 [ATIM]
32
106
+
Lys
TTT
[ENA]
¡û
>W1711460417
MJEF01000019
Bacillota
Enterococcus casseliflavus [MJEF]
73449
73375
-
Lys
TTT
[ENA]
¡û
>W1711460451
MJEG01000003
Bacillota
Enterococcus casseliflavus [MJEG]
226272
226198
-
Lys
TTT
[ENA]
¡û
>W1711738432
MUBE01000002
Bacillota
Enterococcus casseliflavus [MUBE]
183556
183482
-
Lys
TTT
[ENA]
¡û
>W1712036648
NFHQ01000039
Bacillota
Enterococcus cecorum [NFHQ]
336
410
+
Lys
TTT
[ENA]
¡û
>W1712041528
NFLC01000087
Bacillota
Enterococcus cecorum [NFLC]
369
443
+
Lys
TTT
[ENA]
¡û
>W1712067607
NGLC01000001
Bacillota
Enterococcus sp. 5B3_DIV0040 [NGLC]
2662
2736
+
Lys
TTT
[ENA]
¡û
>W1712067643
NGLC01000002
Bacillota
Enterococcus sp. 5B3_DIV0040 [NGLC]
261185
261111
-
Lys
TTT
[ENA]
¡û
>W1712067775
NGLF01000001
Bacillota
Enterococcus sp. 4E1_DIV0656 [NGLF]
967276
967202
-
Lys
TTT
[ENA]
¡û
>W1712067784
NGLF01000001
Bacillota
Enterococcus sp. 4E1_DIV0656 [NGLF]
652721
652647
-
Lys
TTT
[ENA]
¡û
>W1712067887
NGLH01000001
Bacillota
Enterococcus sp. 3G6_DIV0642 [NGLH]
3474797
3474723
-
Lys
TTT
[ENA]
¡û
>W1712067895
NGLH01000001
Bacillota
Enterococcus sp. 3G6_DIV0642 [NGLH]
3228364
3228290
-
Lys
TTT
[ENA]
¡û
>W1712067990
NGLJ01000001
Bacillota
Enterococcus sp. 3C8_DIV0646 [NGLJ]
1307028
1306954
-
Lys
TTT
[ENA]
¡û
>W1712067999
NGLJ01000001
Bacillota
Enterococcus sp. 3C8_DIV0646 [NGLJ]
968651
968577
-
Lys
TTT
[ENA]
¡û
>W1712068072
NGLK01000001
Bacillota
Enterococcus sp. 3C7_DIV0644 [NGLK]
1854070
1853996
-
Lys
TTT
[ENA]
¡û
>W1712068080
NGLK01000001
Bacillota
Enterococcus sp. 3C7_DIV0644 [NGLK]
1581943
1581869
-
Lys
TTT
[ENA]
¡û
>W1712068103
NGLL01000001
Bacillota
Enterococcus sp. 2G9_DIV0600 [NGLL]
3225
3299
+
Lys
TTT
[ENA]
¡û
>W1712068231
NGLN01000001
Bacillota
Enterococcus sp. 2F9_DIV0599 [NGLN]
1493669
1493595
-
Lys
TTT
[ENA]
¡û
>W1712068239
NGLN01000001
Bacillota
Enterococcus sp. 2F9_DIV0599 [NGLN]
1219621
1219547
-
Lys
TTT
[ENA]
¡û
>W1712069291
NGMG01000001
Bacillota
Enterococcus faecium [NGMG]
2925199
2925125
-
Lys
TTT
[ENA]
¡û
>W1712069299
NGMG01000001
Bacillota
Enterococcus faecium [NGMG]
2569656
2569582
-
Lys
TTT
[ENA]
¡û
>W1712069604
NGMM01000005
Bacillota
Enterococcus sp. 9E7_DIV0242 [NGMM]
1348
1422
+
Lys
TTT
[ENA]
¡û
>W1712096936
NIBL01000002
Bacillota
Enterococcus cecorum [NIBL]
264879
264953
+
Lys
TTT
[ENA]
¡û
>W1712096951
NIBL01000004
Bacillota
Enterococcus cecorum [NIBL]
446
520
+
Lys
TTT
[ENA]
¡û
>W1712097017
NIBN01000001
Bacillota
Enterococcus sp. 6D12_DIV0197 [NIBN]
3613700
3613626
-
Lys
TTT
[ENA]
¡û
>W1712097076
NIBN01000001
Bacillota
Enterococcus sp. 6D12_DIV0197 [NIBN]
140555
140481
-
Lys
TTT
[ENA]
¡û
>W1712097162
NIBP01000002
Bacillota
Enterococcus sp. 8E11_MSG4843 [NIBP]
5133
5207
+
Lys
TTT
[ENA]
¡û
>W1712097170
NIBP01000002
Bacillota
Enterococcus sp. 8E11_MSG4843 [NIBP]
345940
346014
+
Lys
TTT
[ENA]
¡û
>W131200943
ASVU01000001
Bacillota
Enterococcus asini ATCC 700915 [ASVU]
774490
774418
-
Lys
TTT
[ENA]
¡û
>W131200952
ASVU01000001
Bacillota
Enterococcus asini ATCC 700915 [ASVU]
561769
561697
-
Lys
TTT
[ENA]
¡û
>WENV180094421
MTBK01006095
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
779
705
-
Lys
TTT
[ENA]
¢þ
>W141013056
AHYS01000007
Bacillota
Enterococcus cecorum DSM 20682 = ATCC 43198 [AHYS]
19271
19197
-
Lys
TTT
[ENA]
¡û
>W141013064
AHYS01000008
Bacillota
Enterococcus cecorum DSM 20682 = ATCC 43198 [AHYS]
179817
179891
+
Lys
TTT
[ENA]
¡û
>WENV180168084
OAVP01009488
[OAVP] human gut metagenome; faeces
626
552
-
Lys
TTT
[ENA]
¢þ
>WENV180180459
OAWK01001878
[OAWK] human gut metagenome; faeces
1308
1382
+
Lys
TTT
[ENA]
¢þ
>WENV180504365
OCAN01001869
[OCAN] human gut metagenome; faeces
5366
5292
-
Lys
TTT
[ENA]
¢þ
>WENV181195920
OEQV01001951
[OEQV] metagenome; water of meat washing
589
663
+
Lys
TTT
[ENA]
¢þ
>WENV181201144
OERM01003130
[OERM] metagenome; water of meat washing
896
822
-
Lys
TTT
[ENA]
¢þ
>WENV182400078
OIEP01000531
[OIEP] human gut metagenome; human gut
3971
3897
-
Lys
TTT
[ENA]
¢þ
>WENV182404403
OIEU01021457
[OIEU] human gut metagenome; human gut
111
37
-
Lys
TTT
[ENA]
¢þ
>WENV182539739
OIXV01014765
[OIXV] human gut metagenome; faeces
63
137
+
Lys
TTT
[ENA]
¢þ
>WENV182601768
OJJJ01000509
[OJJJ] metagenome; faeces
219
293
+
Lys
TTT
[ENA]
¢þ
>WENV182949791
OKVQ01000173
[OKVQ] human gut metagenome; human gut
169
243
+
Lys
TTT
[ENA]
¢þ
>C181114775
CP025223
Bacillota
Enterococcus sp. CR-Ec1 [CP025223]
3785885
3785811
-
Lys
TTT
-
¡û
>C181114784
CP025223
Bacillota
Enterococcus sp. CR-Ec1 [CP025223]
3453617
3453543
-
Lys
TTT
-
¡û
>C181205024
LS483306
Bacillota
Enterococcus cecorum NCTC12421 [LS483306]
164461
164535
+
Lys
TTT
-
¡û
>C181205066
LS483306
Bacillota
Enterococcus cecorum NCTC12421 [LS483306]
2347195
2347121
-
Lys
TTT
-
¡û
>C191055772
CP027786
Bacillota
Tetragenococcus koreensis KCTC 3924 [CP027786]
2238825
2238899
+
Lys
TTT
-
¡û
>C191055785
CP027786
Bacillota
Tetragenococcus koreensis KCTC 3924 [CP027786]
1793433
1793359
-
Lys
TTT
-
¡û
>C191094122
CP032739
Bacillota
Enterococcus casseliflavus EC-369 [CP032739]
822325
822399
+
Lys
TTT
-
¡û
>C191094131
CP032739
Bacillota
Enterococcus casseliflavus EC-369 [CP032739]
1076671
1076745
+
Lys
TTT
-
¡û
>W09115345
ACAH01000074
Bacillota
Enterococcus casseliflavus EC30 [ACAH]
92
166
+
Lys
TTT
[ENA]
¡û
>W09115533
ACAL01000051
Bacillota
Enterococcus casseliflavus EC10 [ACAL]
521
447
-
Lys
TTT
[ENA]
¡û
>W09115666
ACAO01000056
Bacillota
Enterococcus casseliflavus EC20 [ACAO]
92
166
+
Lys
TTT
[ENA]
¡û
>W1910177338
BJDR01000018
Bacillota
Enterococcus nangangensis Feb-94 [BJDR]
175
249
+
Lys
TTT
[ENA]
¡û
>W1910181726
BJMG01000049
Bacillota
Enterococcus casseliflavus NBRC 12256 [BJMG]
92
166
+
Lys
TTT
[ENA]
¡û
>W1910583590
JXKL01000049
Bacillota
Enterococcus cecorum DSM 20682 = ATCC 43198 [JXKL]
3098
3024
-
Lys
TTT
[ENA]
¡û
>W1910605489
LEOX01000036
Bacillota
Enterococcus cecorum 108EA1 [LEOX]
2837
2911
+
Lys
TTT
[ENA]
¡û
>W1910605500
LEOX01000038
Bacillota
Enterococcus cecorum 108EA1 [LEOX]
1217
1143
-
Lys
TTT
[ENA]
¡û
>W1910605525
LEOY01000012
Bacillota
Enterococcus cecorum 170AEA1 [LEOY]
149071
148997
-
Lys
TTT
[ENA]
¡û
>W1910605578
LEOZ01000037
Bacillota
Enterococcus cecorum 197EA2 [LEOZ]
2976
3050
+
Lys
TTT
[ENA]
¡û
>W1910605597
LEOZ01000039
Bacillota
Enterococcus cecorum 197EA2 [LEOZ]
1041
967
-
Lys
TTT
[ENA]
¡û
>W1910605635
LEPA01000035
Bacillota
Enterococcus cecorum 215EA1 [LEPA]
23322
23248
-
Lys
TTT
[ENA]
¡û
>W1810793573
QRJU01000035
Bacillota
Enterococcus casseliflavus AM17-31 [QRJU]
13057
12983
-
Lys
TTT
[ENA]
¡û
>W1810798141
QRMZ01000011
Bacillota
Enterococcus casseliflavus AF48-16 [QRMZ]
200
274
+
Lys
TTT
[ENA]
¡û
>W1810813883
QRZW01000013
Bacillota
Enterococcus asini AF13-3-H [QRZW]
384
456
+
Lys
TTT
[ENA]
¡û
>C151006825
CP004856
Bacillota
Enterococcus casseliflavus EC20 [CP004856]
3394109
3394035
-
Lys
TTT
[Ensembl]
¡û
>C151006834
CP004856
Bacillota
Enterococcus casseliflavus EC20 [CP004856]
3147499
3147425
-
Lys
TTT
[Ensembl]
¡û
>W1510079455
CDRD01001772
Bacillota
Enterococcus casseliflavus 3h10B [CDRD]
245
319
+
Lys
TTT
[ENA]
¡û
>W1510079547
CDRE01001595
Bacillota
Enterococcus casseliflavus 1a6A [CDRE]
5497
5571
+
Lys
TTT
[ENA]
¡û
>W1510079556
CDRE01001902
Bacillota
Enterococcus casseliflavus 1a6A [CDRE]
883
809
-
Lys
TTT
[ENA]
¡û
>W11143393
AEPV01000148
Bacillota
Enterococcus italicus DSM 15952 [AEPV]
88
162
+
Lys
TTT
[ENA]
¡û
>W1511632608
LDDZ01000024
Bacillota
Enterococcus cecorum D-104 [LDDZ]
8681
8607
-
Lys
TTT
[ENA]
¡û
>C161023125
CP010059
Bacillota
Enterococcus cecorum CE1 [CP010059]
1401526
1401600
+
Lys
TTT
-
¡û
>C161023174
CP010060
Bacillota
Enterococcus cecorum SA1 [CP010060]
1396200
1396274
+
Lys
TTT
-
¡û
>C161023246
CP010062
Bacillota
Enterococcus cecorum CE2 [CP010062]
2434525
2434599
+
Lys
TTT
-
¡û
>C161066338
CP014067
Bacillota
Enterococcus gallinarum FDAARGOS_163 [CP014067]
1029236
1029162
-
Lys
TTT
[Ensembl]
¡û
>C161066347
CP014067
Bacillota
Enterococcus gallinarum FDAARGOS_163 [CP014067]
722934
722860
-
Lys
TTT
[Ensembl]
¡û
>W121077269
AKCC01000001
Bacillota
Enterococcus casseliflavus EC20 [AKCC]
2414019
2413945
-
Lys
TTT
[ENA]
¡û
>W121077278
AKCC01000001
Bacillota
Enterococcus casseliflavus EC20 [AKCC]
2167409
2167335
-
Lys
TTT
[ENA]
¡û
>W121086963
AKKS01000033
Bacillota
Enterococcus sp. C1 [AKKS]
521
447
-
Lys
TTT
[ENA]
¡û
>W1610066497
BCPT01000052
Bacillota
Enterococcus casseliflavus NBRC 100478 [BCPT]
439
365
-
Lys
TTT
[ENA]
¡û
>WENV085317
BABC01000359
Gut microbiome of Human (healthy human sample In-B, Infant, Male)
5137
5214
+
Lys
TTT
[ENA]
>W1710063835
BCPT01000052
Bacillota
Enterococcus casseliflavus NBRC 100478 [BCPT]
439
365
-
Lys
TTT
[ENA]
¡û
>W1710559402
FOMP01000006
Bacillota
Enterococcus casseliflavus [FOMP]
255989
255915
-
Lys
TTT
[ENA]
¡û
>W1710659072
JXKD01000006
Bacillota
Enterococcus aquimarinus [JXKD]
145207
145133
-
Lys
TTT
[ENA]
¡û
>W1710659548
JXKT01000105
Bacillota
Enterococcus italicus DSM 15952 [JXKT]
520
446
-
Lys
TTT
[ENA]
¡û
>W1710659888
JXLD01000027
Bacillota
Enterococcus saccharolyticus [JXLD]
14300
14226
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK