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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.318352 (66 seq.)
>W1710859518
LMCE01000094
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
140951
140876
-
Trp
CCA
[ENA]
¡û
>W1710859581
LMCF01000213
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
17547
17472
-
Trp
CCA
[ENA]
¡û
>W1710859701
LMCH01000057
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
62060
61985
-
Trp
CCA
[ENA]
¡û
>W1710859741
LMCI01000034
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
78635
78710
+
Trp
CCA
[ENA]
¡û
>W1710914748
LNTU01000009
Alphaproteobacteria
Paramesorhizobium deserti [LNTU]
191
266
+
Trp
CCA
[ENA]
¡û
>W1710996710
LQBQ01000038
Alphaproteobacteria
Ruegeria marisrubri ZGT118 [LQBQ]
202532
202457
-
Trp
CCA
[ENA]
¡û
>W1711018315
LQWW01000012
Alphaproteobacteria
Bartonella bacilliformis [LQWW]
331
406
+
Trp
CCA
[ENA]
¡û
>W1711022114
LQZT01000034
Alphaproteobacteria
Hoeflea olei [LQZT]
232149
232074
-
Trp
CCA
[ENA]
¡û
>W1711424957
MIEL01000009
Alphaproteobacteria
Pseudovibrio brasiliensis Ab134 [MIEL]
412
487
+
Trp
CCA
[ENA]
¡û
>W1711629853
MPPJ01000040
Alphaproteobacteria
Ochrobactrum sp. P6BS-III [MPPJ]
17122
17047
-
Trp
CCA
[ENA]
¡û
>W1711766813
MUYW01000002
Alphaproteobacteria
Bartonella taylorii [MUYW]
27307
27232
-
Trp
CCA
[ENA]
¡û
>W141010017
AHPK01000002
Alphaproteobacteria
Bartonella rochalimae ATCC BAA-1498 [AHPK]
271257
271182
-
Trp
CCA
[ENA]
¡û
>WENV181234008
OFET01000732
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
14351
14276
-
Trp
CCA
[ENA]
¢þ
>W08005557
ABIA02000004
Alphaproteobacteria
Hoeflea phototrophica DFL-43 [ABIA]
413823
413898
+
Trp
CCA
[ENA]
¡û
>W141245981
CALX01000440
Alphaproteobacteria
Bartonella queenslandensis AUST/NH15 [CALX]
53
128
+
Trp
CCA
[ENA]
¡û
>W141275565
JADB01000003
Alphaproteobacteria
Bartonella elizabethae ATCC 49927 [JADB]
278730
278655
-
Trp
CCA
[ENA]
¡û
>ENV08002492
ABPV01007578
microbial mat metagenome; Guerrero Negro Hypersaline Mat 07; altitude 310m AMSL; sample depth 1m below water level, 6-10mm depth into the mat
317
242
-
Trp
CCA
[ENA]
¡û
>WENV170194838
CEPJ01072639
[CEPJ] marine metagenome genome assembly TARA_048_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4515
4440
-
Trp
CCA
[ENA]
¢þ
>WENV170830516
MDSZ01028434
[MDSZ] marine metagenome; seawater
6688
6763
+
Trp
CCA
[ENA]
¢þ
>WENV170847031
MDTA01052920
[MDTA] marine metagenome; seawater
6670
6745
+
Trp
CCA
[ENA]
¢þ
>WENV170918591
MDTF01001813
[MDTF] marine metagenome; seawater
1151
1226
+
Trp
CCA
[ENA]
¢þ
>C181044791
CP020470
Alphaproteobacteria
Fuscovulum blasticum 28/5 [CP020470]
2638921
2638996
+
Trp
CCA
-
¡û
>C191184411
CP040932
Alphaproteobacteria
Oceanicola sp. D3 [CP040932]
3618421
3618346
-
Trp
CCA
-
¡û
>W141779791
JOOD01000003
Alphaproteobacteria
Ochrobactrum sp. UNC390CL2Tsu3S39 [JOOD]
16963
16888
-
Trp
CCA
[ENA]
¡û
>W1910942143
NJGE01000012
Alphaproteobacteria
Bartonella tribocorum L103 [NJGE]
61845
61770
-
Trp
CCA
[ENA]
¡û
>W1911239588
NSDV01000013
Alphaproteobacteria
Paracoccaceae bacterium La 6 [NSDV]
1933107
1933032
-
Trp
CCA
[ENA]
¡û
>W1911497548
OCPC01000006
Alphaproteobacteria
Hoeflea halophila KCTC 23107 [OCPC]
20157
20232
+
Trp
CCA
[ENA]
¡û
>W1911566120
PCOP01000001
Alphaproteobacteria
Ochrobactrum sp. MYb14 [PCOP]
520916
520991
+
Trp
CCA
[ENA]
¡û
>W1810119013
PHRE01000004
Alphaproteobacteria
Brucella pituitosa BU72 [PHRE]
1232251
1232326
+
Trp
CCA
[ENA]
¡û
>W1810173981
PJOM01000003
Alphaproteobacteria
Pseudotabrizicola formosa XJSP [PJOM]
175310
175385
+
Trp
CCA
[ENA]
¡û
>W1810346557
PVBR01000040
Alphaproteobacteria
Phyllobacterium phragmitis 1N-3 [PVBR]
377
452
+
Trp
CCA
[ENA]
¡û
>W1810423401
PYSY02000001
Alphaproteobacteria
Brucella pituitosa CCUG 50899 [PYSY]
1496308
1496233
-
Trp
CCA
[ENA]
¡û
>W1810444970
PZKE01000029
Alphaproteobacteria
Fuscovulum blasticum DSM 2131 [PZKE]
18138
18063
-
Trp
CCA
[ENA]
¡û
>W1810750668
QOZG01000022
Alphaproteobacteria
Phyllobacterium salinisoli LLAN61 [QOZG]
378
453
+
Trp
CCA
[ENA]
¡û
>W1810917895
QWEY01000001
Alphaproteobacteria
Pseudotabrizicola alkalilacus DJC [QWEY]
14365
14440
+
Trp
CCA
[ENA]
¡û
>C151037914
CP008820
Alphaproteobacteria
Brucella anthropi OAB [CP008819, CP008820]
1500184
1500259
+
Trp
CCA
[Ensembl]
¡û
>C151083108
CP011479
Alphaproteobacteria
Hoeflea sp. IMCC20628 [CP011479]
2330728
2330653
-
Trp
CCA
[Ensembl]
¡û
>C11111827
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
2234218
2234143
-
Trp
CCA
[Ensembl]
¡û
>C11111879
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
2520584
2520509
-
Trp
CCA
[Ensembl]
¡û
>W1511347502
JRJG01000133
Alphaproteobacteria
Hoeflea sp. BAL378 [JRJG]
18222
18147
-
Trp
CCA
[ENA]
¡û
>W1511564319
LADQ01000111
Alphaproteobacteria
Hoeflea sp. BRH_c9 [LADQ]
41869
41794
-
Trp
CCA
[ENA]
¡û
>C121006698
CP003147
Alphaproteobacteria
Pseudovibrio sp. FO-BEG1 [CP003147]
4222144
4222069
-
Trp
CCA
[Ensembl]
¡û
>C161047271
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
2624721
2624646
-
Trp
CCA
-
¡û
>C161064349
CP014012
Alphaproteobacteria
Bartonella bacilliformis ATCC 35685D-5 [CP014012]
617434
617509
+
Trp
CCA
-
¡û
>C161099998
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
2623617
2623542
-
Trp
CCA
-
¡û
>W121055812
AIII01000015
Alphaproteobacteria
Brucella anthropi CTS-325 [AIII]
452
527
+
Trp
CCA
[ENA]
¡û
>W121059142
AILV01000003
Alphaproteobacteria
Bartonella doshiae NCTC 12862 [AILV]
93661
93586
-
Trp
CCA
[ENA]
¡û
>W121059483
AIMD01000035
Alphaproteobacteria
Bartonella taylorii 8TBB [AIMD]
179399
179324
-
Trp
CCA
[ENA]
¡û
>W121059526
AIME01000004
Alphaproteobacteria
Bartonella alsatica IBS 382 [AIME]
126879
126804
-
Trp
CCA
[ENA]
¡û
>W1610578292
LAXI01000006
Alphaproteobacteria
Roseovarius indicus [LAXI]
273049
272974
-
Trp
CCA
[ENA]
¡û
>W1610585620
LCWX01000220
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
18217
18142
-
Trp
CCA
[ENA]
¡û
>W1610721864
LMCE01000094
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
140951
140876
-
Trp
CCA
[ENA]
¡û
>W1610721927
LMCF01000213
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
17547
17472
-
Trp
CCA
[ENA]
¡û
>W1610722047
LMCH01000057
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
62060
61985
-
Trp
CCA
[ENA]
¡û
>W1610722087
LMCI01000034
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
78635
78710
+
Trp
CCA
[ENA]
¡û
>W1610773107
LNTU01000009
Alphaproteobacteria
Paramesorhizobium deserti [LNTU]
191
266
+
Trp
CCA
[ENA]
¡û
>W1610851367
LQBQ01000038
Alphaproteobacteria
Ruegeria marisrubri ZGT118 [LQBQ]
202532
202457
-
Trp
CCA
[ENA]
¡û
>W1610866791
LQWW01000012
Alphaproteobacteria
Bartonella bacilliformis [LQWW]
331
406
+
Trp
CCA
[ENA]
¡û
>W1710015462
AQQR01000019
Alphaproteobacteria
Marinibacterium profundimaris [AQQR]
1577
1652
+
Trp
CCA
[ENA]
¡û
>W1710530949
FNPF01000009
Alphaproteobacteria
Citreimonas salinaria [FNPF]
102665
102740
+
Trp
CCA
[ENA]
¡û
>W1710555053
FOIZ01000004
Alphaproteobacteria
Cognatiyoonia koreensis [FOIZ]
4512
4587
+
Trp
CCA
[ENA]
¡û
>W1710559862
FOMY01000007
Alphaproteobacteria
Roseovarius indicus [FOMY]
3703
3778
+
Trp
CCA
[ENA]
¡û
>W1710573896
FOXV01000017
Alphaproteobacteria
Roseivivax halotolerans [FOXV]
58021
57946
-
Trp
CCA
[ENA]
¡û
>W1710587492
FQYO01000002
Alphaproteobacteria
Wenxinia saemankumensis [FQYO]
222106
222181
+
Trp
CCA
[ENA]
¡û
>W1710697165
LAXI01000006
Alphaproteobacteria
Roseovarius indicus [LAXI]
273049
272974
-
Trp
CCA
[ENA]
¡û
>W1710704811
LCWX01000220
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
18217
18142
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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