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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.318570 (7 seq.)
>A171000097
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
937181
937255
+
Lys
TTT
-
¡û
>A171000906
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
1317735
1317809
+
Lys
TTT
-
¡û
>A171007305
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
224657
224730
+
Lys
TTT
-
¡û
>A171007709
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
1325343
1325417
+
Lys
TTT
-
¡û
>At1660
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
954430
954503
+
Lys
TTT
[Ensembl]
¡û
>WENV170676691
LDZS01001915
[LDZS] terrestrial metagenome; oil reservoir sample K3
4040
3964
-
Lys
TTT
[ENA]
¢þ
>W1911722799
QREL01000001
Euryarchaeota
Methanothermobacter defluvii DSM 7466 [QREL]
287445
287371
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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