This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.318890 (15 seq.)
>C171118986
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
1722623
1722698
+
Ala
TGC
-
¡û
>C171119005
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
1828993
1829068
+
Ala
TGC
-
¡û
>C171119016
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
1841791
1841866
+
Ala
TGC
-
¡û
>C171119058
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
2887370
2887445
+
Ala
TGC
-
¡û
>C171119067
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3053831
3053906
+
Ala
TGC
-
¡û
>C171119095
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3263380
3263455
+
Ala
TGC
-
¡û
>C171119114
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3316525
3316600
+
Ala
TGC
-
¡û
>C171119121
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3436883
3436958
+
Ala
TGC
-
¡û
>C171119133
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3817913
3817988
+
Ala
TGC
-
¡û
>C171119153
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
4539712
4539637
-
Ala
TGC
-
¡û
>C171119181
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
18057
17982
-
Ala
TGC
-
¡û
>WENV182216137
OHQM01022071
[OHQM] human gut metagenome; feces
77
152
+
Ala
TGC
[ENA]
¢þ
>WENV183646786
OQVR01015111
[OQVR] human gut metagenome; human gut
1087
1162
+
Ala
TGC
[ENA]
¢þ
>WENV170696888
LGVF01058446
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
3483
3408
-
Ala
TGC
[ENA]
¢þ
>C181016541
CP014606
Bacillota
endosymbiont 'TC1' of Trimyema compressum [CP014606]
1280436
1280361
-
Ala
TGC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK