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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.319100 (74 seq.)
>W1710793524
LJPL01000006
Bacillota
Streptococcus pasteurianus [LJPL]
253
327
+
His
GTG
[ENA]
¡û
>W1710989086
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
914254
914328
+
His
GTG
[ENA]
¡û
>W131159531
AQVD01000005
Bacillota
Streptococcus ferus DSM 20646 [AQVD]
141859
141785
-
His
GTG
[ENA]
¡û
>W131166202
ARCG01000056
Bacillota
Streptococcus orisratti DSM 15617 [ARCG]
9385
9311
-
His
GTG
[ENA]
¡û
>W131238196
AUUD01000034
Bacillota
Streptococcus sobrinus DSM 20742 = ATCC 33478 [AUUD]
711
785
+
His
GTG
[ENA]
¡û
>WENV180116429
OAQU01002735
[OAQU] human gut metagenome; ENVO:feces
167
241
+
His
GTG
[ENA]
¢þ
>WENV180116463
OAQV01000014
[OAQV] human gut metagenome; ENVO:feces
853
927
+
His
GTG
[ENA]
¢þ
>WENV180415642
OBVF01000033
[OBVF] human gut metagenome; faeces
584
658
+
His
GTG
[ENA]
¢þ
>W141145880
AWVA01000115
Bacillota
Streptococcus sobrinus W1703 [AWVA]
292
218
-
His
GTG
[ENA]
¡û
>WENV181555278
OGIT01000580
[OGIT] metagenome; Human gut stool
14451
14525
+
His
GTG
[ENA]
¢þ
>WENV181557987
OGIW01000982
[OGIW] metagenome; Human gut stool
14459
14533
+
His
GTG
[ENA]
¢þ
>WENV181879728
OGXF01001716
[OGXF] human gut metagenome; faeces
14453
14527
+
His
GTG
[ENA]
¢þ
>WENV181887619
OGXL01010026
[OGXL] human gut metagenome; faeces
3287
3361
+
His
GTG
[ENA]
¢þ
>WENV181948509
OGZE01005600
[OGZE] human gut metagenome; faeces
3005
3079
+
His
GTG
[ENA]
¢þ
>WENV181965192
OGZS01002529
[OGZS] human gut metagenome; faeces
1468
1542
+
His
GTG
[ENA]
¢þ
>WENV181998337
OHAU01055178
[OHAU] human gut metagenome; faeces
579
653
+
His
GTG
[ENA]
¢þ
>WENV182140658
OHKR01000557
[OHKR] human gut metagenome; feces
3042
3116
+
His
GTG
[ENA]
¢þ
>WENV182230118
OHRK01000791
[OHRK] human gut metagenome; feces
2157
2231
+
His
GTG
[ENA]
¢þ
>WENV182814553
OJYK01000383
[OJYK] human gut metagenome; human gut
12763
12689
-
His
GTG
[ENA]
¢þ
>WENV182820237
OKAL01000059
[OKAL] human gut metagenome; human gut
14459
14533
+
His
GTG
[ENA]
¢þ
>WENV182842412
OKIE01000088
[OKIE] human gut metagenome; human gut
14459
14533
+
His
GTG
[ENA]
¢þ
>WENV182842452
OKIE01000617
[OKIE] human gut metagenome; human gut
1375
1449
+
His
GTG
[ENA]
¢þ
>WENV182842788
OKIG01000753
[OKIG] human gut metagenome; human gut
1667
1593
-
His
GTG
[ENA]
¢þ
>WENV183606533
OODN01012923
[OODN] human gut metagenome; human gut
1018
944
-
His
GTG
[ENA]
¢þ
>WENV183611054
OODS01037276
[OODS] human gut metagenome; human gut
639
713
+
His
GTG
[ENA]
¢þ
>C181179358
CP029490
Bacillota
Streptococcus sobrinus SL1 [CP029490]
82131
82205
+
His
GTG
-
¡û
>C181180429
CP029559
Bacillota
Streptococcus sobrinus NIDR 6715-15 [CP029559]
82932
83006
+
His
GTG
-
¡û
>C181180492
CP029560
Bacillota
Streptococcus sobrinus NIDR 6715-7 [CP029560]
82933
83007
+
His
GTG
-
¡û
>C181207401
LS483343
Bacillota
Streptococcus ferus NCTC12278 [LS483343]
127512
127586
+
His
GTG
-
¡û
>C181209617
LS483378
Bacillota
Streptococcus sobrinus NCTC12279 [LS483378]
82143
82217
+
His
GTG
-
¡û
>C181209818
LS483381
Bacillota
Streptococcus sobrinus NCTC10921 [LS483381]
82945
83019
+
His
GTG
-
¡û
>C181214976
LS483462
Bacillota
Streptococcus pasteurianus NCTC13784 [LS483462]
84910
84984
+
His
GTG
-
¡û
>C191166392
CP039457
Bacillota
Streptococcus pasteurianus WUSP067 [CP039457]
93082
93156
+
His
GTG
-
¡û
>W141701920
JMLC01000035
Bacillota
Streptococcus sobrinus DSM 20742 = ATCC 33478 [JMLC]
1060
1134
+
His
GTG
[ENA]
¡û
>W141727304
JNCV01000006
Bacillota
Streptococcus macedonicus [JNCV]
169
243
+
His
GTG
[ENA]
¡û
>W1911162476
NPOU01000001
Bacillota
Streptococcus sobrinus KCOM 1157 [NPOU]
1775761
1775687
-
His
GTG
[ENA]
¡û
>W1810069624
PEBM01000050
Bacillota
Streptococcus macedonicus 27MV [PEBM]
50385
50311
-
His
GTG
[ENA]
¡û
>W1810069655
PEBN01000024
Bacillota
Streptococcus macedonicus 19AS [PEBN]
731
805
+
His
GTG
[ENA]
¡û
>W1810188072
PKIB01000009
Bacillota
Streptococcus macedonicus UMB0733 [PKIB]
58880
58806
-
His
GTG
[ENA]
¡û
>W1810904657
QVEM01000027
Bacillota
Streptococcus pasteurianus AM21-19 [QVEM]
144
218
+
His
GTG
[ENA]
¡û
>W1810905303
QVEY01000038
Bacillota
Streptococcus pasteurianus AF13-35 [QVEY]
144
218
+
His
GTG
[ENA]
¡û
>W1810907438
QVHT01000004
Bacillota
Streptococcus gallolyticus AM24-4 [QVHT]
138
212
+
His
GTG
[ENA]
¡û
>W1810907652
QVHX01000015
Bacillota
Streptococcus gallolyticus TM07-4AT [QVHX]
138
212
+
His
GTG
[ENA]
¡û
>W1510069676
CDEY01000029
Bacillota
Streptococcus pasteurianus HC-2909-2 [CDEY]
264
338
+
His
GTG
[ENA]
¡û
>W10127551
AEEL01000002
Bacillota
Streptococcus equinus ATCC 700338 [AEEL]
167
241
+
His
GTG
[ENA]
¡û
>C11121166
AP012054
Bacillota
Streptococcus pasteurianus ATCC 43144 [AP012054]
78595
78669
+
His
GTG
[Ensembl]
¡û
>W1511447397
JUYN01000058
Bacillota
Streptococcus pasteurianus 651_SPAS [JUYN]
146
72
-
His
GTG
[ENA]
¡û
>W11135039
AEEL01000002
Bacillota
Streptococcus equinus ATCC 700338 [AEEL]
167
241
+
His
GTG
[ENA]
¡û
>W11179186
AGGD01000319
Bacillota
Streptococcus sobrinus TCI-16 [AGGD]
1336
1262
-
His
GTG
[ENA]
¡û
>W11179309
AGGH01000399
Bacillota
Streptococcus sobrinus TCI-54 [AGGH]
179
253
+
His
GTG
[ENA]
¡û
>W11179334
AGGI01000358
Bacillota
Streptococcus sobrinus TCI-56 [AGGI]
179
253
+
His
GTG
[ENA]
¡û
>W11179347
AGGJ01000067
Bacillota
Streptococcus sobrinus TCI-61 [AGGJ]
180
254
+
His
GTG
[ENA]
¡û
>W11179417
AGGL01000181
Bacillota
Streptococcus sobrinus TCI-79 [AGGL]
1329
1255
-
His
GTG
[ENA]
¡û
>W11179453
AGGM01000263
Bacillota
Streptococcus sobrinus TCI-80 [AGGM]
828
754
-
His
GTG
[ENA]
¡û
>W11179482
AGGN01000231
Bacillota
Streptococcus sobrinus TCI-89 [AGGN]
1324
1250
-
His
GTG
[ENA]
¡û
>W11179523
AGGO01000412
Bacillota
Streptococcus sobrinus TCI-98 [AGGO]
180
252
+
His
GTG
[ENA]
¡û
>W11179543
AGGP01000208
Bacillota
Streptococcus sobrinus TCI-107 [AGGP]
180
254
+
His
GTG
[ENA]
¡û
>W11179636
AGGS01000189
Bacillota
Streptococcus sobrinus TCI-124 [AGGS]
1321
1247
-
His
GTG
[ENA]
¡û
>W11179765
AGGX01000053
Bacillota
Streptococcus sobrinus TCI-352 [AGGX]
11446
11372
-
His
GTG
[ENA]
¡û
>W11179798
AGGY01000186
Bacillota
Streptococcus sobrinus TCI-355 [AGGY]
479
405
-
His
GTG
[ENA]
¡û
>W11179830
AGGZ01000152
Bacillota
Streptococcus sobrinus TCI-357 [AGGZ]
2312
2238
-
His
GTG
[ENA]
¡û
>W11179856
AGHA01000296
Bacillota
Streptococcus sobrinus TCI-363 [AGHA]
83
157
+
His
GTG
[ENA]
¡û
>W11179917
AGHC01000266
Bacillota
Streptococcus sobrinus TCI-367 [AGHC]
179
253
+
His
GTG
[ENA]
¡û
>W11180033
AGHG01000342
Bacillota
Streptococcus sobrinus TCI-377 [AGHG]
76
2
-
His
GTG
[ENA]
¡û
>W11180070
AGHH01000377
Bacillota
Streptococcus sobrinus TCI-381 [AGHH]
80
6
-
His
GTG
[ENA]
¡û
>W11180103
AGHI01000189
Bacillota
Streptococcus sobrinus TCI-384 [AGHI]
179
253
+
His
GTG
[ENA]
¡û
>W11180145
AGHK01000261
Bacillota
Streptococcus sobrinus TCI-395 [AGHK]
179
253
+
His
GTG
[ENA]
¡û
>W11180196
AGHM01000279
Bacillota
Streptococcus sobrinus TCI-2 [AGHM]
180
254
+
His
GTG
[ENA]
¡û
>W11180294
AGHP01000265
Bacillota
Streptococcus sobrinus TCI-160 [AGHP]
180
254
+
His
GTG
[ENA]
¡û
>W11180410
AGHT01000155
Bacillota
Streptococcus sobrinus TCI-200 [AGHT]
81
155
+
His
GTG
[ENA]
¡û
>C121017991
HE613569
Bacillota
Streptococcus macedonicus ACA-DC 198 [HE613569]
85876
85950
+
His
GTG
[Ensembl]
¡û
>C161059309
CP013688
Bacillota
Streptococcus gallolyticus ICDDRB-NRC-S1 [CP013688]
1878428
1878354
-
His
GTG
[Ensembl]
¡û
>W1610514137
FLZS01000002
Bacillota
Streptococcus macedonicus 679 [FLZS]
11625
11699
+
His
GTG
[ENA]
¡û
>W1610843962
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
914254
914328
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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