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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.319105 (23 seq.)
>W131220857
ATZX01000039
Bacillota
Firmicutes bacterium JGI 0000119-C08 [ATZX]
41661
41736
+
Ala
TGC
[ENA]
¡û
>C171098271
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
134297
134372
+
Ala
TGC
-
¡û
>C171098280
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
340475
340550
+
Ala
TGC
-
¡û
>C007980
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
11832
11907
+
Ala
TGC
[Ensembl]
¡û
>C007989
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
186423
186498
+
Ala
TGC
[Ensembl]
¡û
>WENV180346844
OBLN01343161
[OBLN] sediment metagenome; sediment
238
163
-
Ala
TGC
[ENA]
¢þ
>WENV180577430
OCMA01028586
[OCMA] human gut metagenome; human gut
237
312
+
Ala
TGC
[ENA]
¢þ
>WENV180660489
OCVV010940908
[OCVV] gut metagenome; gut
1779
1854
+
Ala
TGC
[ENA]
¢þ
>WENV180660491
OCVV010940908
[OCVV] gut metagenome; gut
1779
1854
+
Ala
TGC
[ENA]
¢þ
>WENV180678585
OCVV012028579
[OCVV] gut metagenome; gut
153
78
-
Ala
TGC
[ENA]
¢þ
>WENV180678586
OCVV012028579
[OCVV] gut metagenome; gut
153
78
-
Ala
TGC
[ENA]
¢þ
>WENV180919535
ODTG01157940
[ODTG] human metagenome; G_DNA_Stool
2
77
+
Ala
TGC
[ENA]
¢þ
>WENV181592677
OGKR01041417
[OGKR] metagenome; Human gut stool
107
32
-
Ala
TGC
[ENA]
¢þ
>WENV181663318
OGOH01013855
[OGOH] human gut metagenome; faeces
2706
2781
+
Ala
TGC
[ENA]
¢þ
>WENV182273121
OHUI01019546
[OHUI] human gut metagenome; feces
570
645
+
Ala
TGC
[ENA]
¢þ
>WENV182470833
OIPH01014116
[OIPH] human gut metagenome; human gut
265
190
-
Ala
TGC
[ENA]
¢þ
>WENV170708146
LNAP01053318
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
508
583
+
Ala
TGC
[ENA]
¢þ
>C191123429
CP034346
Bacillota
Paenibacillus lutimineralis MBLB1234 [CP034346]
152362
152437
+
Ala
TGC
-
¡û
>C191123488
CP034346
Bacillota
Paenibacillus lutimineralis MBLB1234 [CP034346]
5452885
5452810
-
Ala
TGC
-
¡û
>W09105162
AAOP01000025
Bacillota
Desulforamulus reducens MI-1 [AAOP]
43518
43593
+
Ala
TGC
[ENA]
¡û
>W1910004774
AWQQ01000055
Bacillota
Desulforamulus profundi Bs107 [AWQQ]
81674
81599
-
Ala
TGC
[ENA]
¡û
>C11107316
CP002780
Bacillota
Desulforamulus ruminis DSM 2154 [CP002780]
253939
254014
+
Ala
TGC
[Ensembl]
¡û
>C11107358
CP002780
Bacillota
Desulforamulus ruminis DSM 2154 [CP002780]
2460928
2460853
-
Ala
TGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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