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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.319120 (90 seq.)
>W1710871253
LMLE01000001
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
334295
334220
-
Met
CAT
[ENA]
¡û
>W1710871255
LMLE01000001
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
333788
333713
-
Met
CAT
[ENA]
¡û
>W1710876326
LMPD01000001
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
579524
579449
-
Met
CAT
[ENA]
¡û
>W1710876328
LMPD01000001
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
579228
579155
-
Met
CAT
[ENA]
¡û
>W1710877048
LMPU01000001
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
622966
622891
-
Met
CAT
[ENA]
¡û
>W1710877050
LMPU01000001
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
622668
622593
-
Met
CAT
[ENA]
¡û
>W1710888298
LMZQ01000003
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
441371
441446
+
Met
CAT
[ENA]
¡û
>W1710888300
LMZQ01000003
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
443590
443665
+
Met
CAT
[ENA]
¡û
>W1711167072
LVWA01000004
Bacteroidota
Pontibacter flavimaris S10-8 [LVWA]
385027
385102
+
Met
CAT
[ENA]
¡û
>W1711392069
MENE01000172
Bacteroidota
Bacteroidetes bacterium GWA2_31_9b [MENE]
16631
16706
+
Met
CAT
[ENA]
¡û
>W1711392122
MENG01000014
Bacteroidota
Bacteroidetes bacterium GWA2_33_15 [MENG]
42634
42559
-
Met
CAT
[ENA]
¡û
>W1711392185
MENH01000198
Bacteroidota
Bacteroidetes bacterium GWA2_40_14 [MENH]
8191
8266
+
Met
CAT
[ENA]
¡û
>W1711392296
MENK01000029
Bacteroidota
Bacteroidetes bacterium GWB2_32_14 [MENK]
42629
42554
-
Met
CAT
[ENA]
¡û
>W1711392420
MENO01000013
Bacteroidota
Bacteroidetes bacterium GWC2_40_13 [MENO]
8107
8182
+
Met
CAT
[ENA]
¡û
>W1711392585
MENS01000041
Bacteroidota
Bacteroidetes bacterium GWD2_40_43 [MENS]
8487
8562
+
Met
CAT
[ENA]
¡û
>W1711392691
MENV01000011
Bacteroidota
Bacteroidetes bacterium GWE2_32_14 [MENV]
298400
298475
+
Met
CAT
[ENA]
¡û
>W1711392814
MENY01000046
Bacteroidota
Bacteroidetes bacterium GWE2_40_63 [MENY]
597015
596940
-
Met
CAT
[ENA]
¡û
>W1711393040
MEOE01000023
Bacteroidota
Bacteroidetes bacterium GWF2_33_16 [MEOE]
113033
112958
-
Met
CAT
[ENA]
¡û
>W1711393203
MEOJ01000039
Bacteroidota
Bacteroidetes bacterium GWF2_40_13 [MEOJ]
8445
8520
+
Met
CAT
[ENA]
¡û
>W1711393870
MEPN01000071
Bacteroidota
Bacteroidetes bacterium RIFOXYC2_FULL_40_12 [MEPN]
14422
14347
-
Met
CAT
[ENA]
¡û
>W1712082036
NHOT01000001
Bacteroidota
Pedobacter sp. AJM [NHOT]
412449
412524
+
Met
CAT
[ENA]
¡û
>W1712082038
NHOT01000001
Bacteroidota
Pedobacter sp. AJM [NHOT]
418699
418774
+
Met
CAT
[ENA]
¡û
>C171117341
CP021237
Bacteroidota
Sphingobacteriaceae bacterium GW460-11-11-14-LB5 [CP021237]
5721190
5721115
-
Met
CAT
-
¡û
>C171117343
CP021237
Bacteroidota
Sphingobacteriaceae bacterium GW460-11-11-14-LB5 [CP021237]
5720808
5720733
-
Met
CAT
-
¡û
>WENV180082789
MPMC02258605
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
312
239
-
fMet
CAT
[ENA]
¢þ
>WENV180296870
OBJA01004004
[OBJA] soil metagenome; sediment, water from around vicinity
19
94
+
fMet
CAT
[ENA]
¢þ
>WENV180297385
OBJA01027142
[OBJA] soil metagenome; sediment, water from around vicinity
121
194
+
fMet
CAT
[ENA]
¢þ
>WENV181230878
OFEK01004671
[OFEK] activated sludge metagenome; Anaerobic digester
5478
5405
-
fMet
CAT
[ENA]
¢þ
>W141292009
JAUG01000007
Bacteroidota
Pedobacter borealis DSM 19626 [JAUG]
70908
70983
+
Met
CAT
[ENA]
¡û
>W141292038
JAUG01000095
Bacteroidota
Pedobacter borealis DSM 19626 [JAUG]
5983
6058
+
Met
CAT
[ENA]
¡û
>W141350117
JCKI01000008
Bacteroidota
Pedobacter sp. R20-19 [JCKI]
132831
132906
+
Met
CAT
[ENA]
¡û
>W141350119
JCKI01000008
Bacteroidota
Pedobacter sp. R20-19 [JCKI]
133719
133794
+
Met
CAT
[ENA]
¡û
>WENV183741253
PJUF01068178
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
221
297
+
fMet
CAT
[ENA]
¢þ
>WENV183747469
PPCM01002693
[PPCM] marine sediment metagenome; marine sediment
1625
1551
-
fMet
CAT
[ENA]
¢þ
>WENV183805121
PVBE010989154
[PVBE] marine metagenome; water
273
200
-
fMet
CAT
[ENA]
¢þ
>WENV170574535
FLYM01054729
[FLYM] hot springs metagenome; Sediment
97
22
-
Met
CAT
[ENA]
¢þ
>WENV170642826
JFJP01045645
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
863
788
-
Met
CAT
[ENA]
¢þ
>WENV170642840
JFJP01045890
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
6812
6887
+
Met
CAT
[ENA]
¢þ
>WENV170900879
MDTD01160921
[MDTD] marine metagenome; seawater
436
361
-
Met
CAT
[ENA]
¢þ
>WENV171003247
NNBT01002847
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
200
275
+
Met
CAT
[ENA]
¢þ
>WENV171003273
NNBT01003352
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
1798
1723
-
Met
CAT
[ENA]
¢þ
>C191018705
CP021235
Bacteroidota
Pontibacter actiniarum DSM 19842 [CP021235]
3907309
3907235
-
Met
CAT
-
¡û
>W141560699
JHXV01000018
Bacteroidota
Crocinitomix catalasitica ATCC 23190 [JHXV]
26909
26984
+
Met
CAT
[ENA]
¡û
>W1910664208
MBTA01000030
Bacteroidota
Pelobium manganitolerans YS-25 [MBTA]
42639
42713
+
Met
CAT
[ENA]
¡û
>W1911496567
OCMT01000003
Bacteroidota
Pedobacter xixiisoli CGMCC 1.12803 [OCMT]
227533
227458
-
Met
CAT
[ENA]
¡û
>W1810503847
QBKL01000011
Bacteroidota
Pedobacter sp. OK291 [QBKL]
589834
589759
-
Met
CAT
[ENA]
¡û
>W1810503849
QBKL01000011
Bacteroidota
Pedobacter sp. OK291 [QBKL]
589572
589497
-
Met
CAT
[ENA]
¡û
>W1810533378
QCZK01000003
Bacteroidota
Botryobacter ruber KCTC 52794 [QCZK]
48039
47965
-
Met
CAT
[ENA]
¡û
>W1810543374
QDKG01000004
Bacteroidota
Sphingobacterium corticibacter 2c-3 [QDKG]
194621
194548
-
Met
CAT
[ENA]
¡û
>W1810606121
QGNY01000005
Bacteroidota
Pedobacter paludis R-8 [QGNY]
324057
323982
-
Met
CAT
[ENA]
¡û
>W1810606123
QGNY01000005
Bacteroidota
Pedobacter paludis R-8 [QGNY]
306795
306720
-
Met
CAT
[ENA]
¡û
>W1810606156
QGNZ01000002
Bacteroidota
Pedobacter yonginense KCTC22721 [QGNZ]
288281
288356
+
Met
CAT
[ENA]
¡û
>W1810606158
QGNZ01000002
Bacteroidota
Pedobacter yonginense KCTC22721 [QGNZ]
302364
302439
+
Met
CAT
[ENA]
¡û
>W1810704236
QMHN01000005
Bacteroidota
Pedobacter chitinilyticus CM134L-2 [QMHN]
144205
144130
-
Met
CAT
[ENA]
¡û
>W1810704278
QMHO01000007
Bacteroidota
Pedobacter nanyangensis Q-4 [QMHO]
676
601
-
Met
CAT
[ENA]
¡û
>W1810704305
QMHP01000004
Bacteroidota
Nubsella zeaxanthinifaciens TDMA-5 [QMHP]
140768
140693
-
Met
CAT
[ENA]
¡û
>W1810789251
QRGB01000001
Bacteroidota
Pedobacter indicus SM1810 [QRGB]
1059276
1059202
-
Met
CAT
[ENA]
¡û
>W1810885492
QUNJ01000003
Bacteroidota
Pedobacter sp. YR510 [QUNJ]
910012
909937
-
Met
CAT
[ENA]
¡û
>W1810885494
QUNJ01000003
Bacteroidota
Pedobacter sp. YR510 [QUNJ]
909506
909431
-
Met
CAT
[ENA]
¡û
>W1810885588
QUNL01000002
Bacteroidota
Pedobacter sp. OV280 [QUNL]
143010
143085
+
Met
CAT
[ENA]
¡û
>W1810885590
QUNL01000002
Bacteroidota
Pedobacter sp. OV280 [QUNL]
143309
143384
+
Met
CAT
[ENA]
¡û
>C151056018
CP009621
Bacteroidota
Pontibacter korlensis X14-1T [CP009621]
1400926
1400851
-
Met
CAT
[Ensembl]
¡û
>WENV029274
AACY021185274
Marine microbial communities from Global Ocean Sampling (GOS)
718
643
-
Met
CAT
[ENA]
>SRA1027486
SRR035086.132912
454 Sequencing (SRP001807)
305
232
-
Met
CAT
[SRA]
>W1510021643
BBZD01000047
Bacteroidota
Bacteroidales bacterium 6E [BBZD]
4295
4220
-
Met
CAT
[ENA]
¡û
>C11109418
CP002542
Bacteroidota
Fluviicola taffensis DSM 16823 [CP002542]
2062973
2062898
-
Met
CAT
[Ensembl]
¡û
>W1511390953
JSYN01000005
Bacteroidota
Pedobacter kyungheensis KACC 16221 [JSYN]
119548
119473
-
Met
CAT
[ENA]
¡û
>W1511390955
JSYN01000005
Bacteroidota
Pedobacter kyungheensis KACC 16221 [JSYN]
109470
109395
-
Met
CAT
[ENA]
¡û
>C11121200
CP002584
Bacteroidota
Sphingobacterium sp. 21 [CP002584]
400675
400750
+
Met
CAT
[Ensembl]
¡û
>W1511646559
LECU01000004
Bacteroidota
Pedobacter sp. BMA [LECU]
715303
715378
+
Met
CAT
[ENA]
¡û
>W1511646561
LECU01000004
Bacteroidota
Pedobacter sp. BMA [LECU]
720845
720920
+
Met
CAT
[ENA]
¡û
>W1511698613
LGIA01000006
Bacteroidota
Sunxiuqinia dokdonensis SK [LGIA]
5778
5851
+
Met
CAT
[ENA]
¡û
>W121063668
AJLG01000085
Bacteroidota
Pedobacter agri PB92 [AJLG]
20981
20906
-
Met
CAT
[ENA]
¡û
>W121063670
AJLG01000085
Bacteroidota
Pedobacter agri PB92 [AJLG]
20473
20398
-
Met
CAT
[ENA]
¡û
>W1610733599
LMLE01000001
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
334295
334220
-
Met
CAT
[ENA]
¡û
>W1610733601
LMLE01000001
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
333788
333713
-
Met
CAT
[ENA]
¡û
>W1610738672
LMPD01000001
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
579524
579449
-
Met
CAT
[ENA]
¡û
>W1610738674
LMPD01000001
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
579228
579155
-
Met
CAT
[ENA]
¡û
>W1610739394
LMPU01000001
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
622966
622891
-
Met
CAT
[ENA]
¡û
>W1610739396
LMPU01000001
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
622668
622593
-
Met
CAT
[ENA]
¡û
>W1610748676
LMZQ01000003
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
441371
441446
+
Met
CAT
[ENA]
¡û
>W1610748678
LMZQ01000003
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
443590
443665
+
Met
CAT
[ENA]
¡û
>W1610867549
LQXS01000003
Bacteroidota
Sphingobacterium sp. CFCC 11742 [LQXS]
382451
382526
+
Met
CAT
[ENA]
¡û
>W1710516070
FNCH01000019
Bacteroidota
Pedobacter terrae [FNCH]
3470
3545
+
Met
CAT
[ENA]
¡û
>W1710516072
FNCH01000019
Bacteroidota
Pedobacter terrae [FNCH]
8094
8169
+
Met
CAT
[ENA]
¡û
>W1710551660
FOGG01000004
Bacteroidota
Pedobacter rhizosphaerae [FOGG]
193310
193385
+
Met
CAT
[ENA]
¡û
>W1710551662
FOGG01000004
Bacteroidota
Pedobacter rhizosphaerae [FOGG]
200329
200404
+
Met
CAT
[ENA]
¡û
>W1710555466
FOJM01000010
Bacteroidota
Pedobacter suwonensis [FOJM]
124958
125033
+
Met
CAT
[ENA]
¡û
>W1710555468
FOJM01000010
Bacteroidota
Pedobacter suwonensis [FOJM]
129142
129217
+
Met
CAT
[ENA]
¡û
>W1710579002
FPCA01000002
Bacteroidota
Pontibacter akesuensis [FPCA]
411833
411908
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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