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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.319162 (62 seq.)
>W1710865293
LMGO01000001
Betaproteobacteria
Achromobacter sp. Root565 [LMGO]
2559642
2559566
-
Arg
ACG
[ENA]
¡û
>W1710865294
LMGO01000001
Betaproteobacteria
Achromobacter sp. Root565 [LMGO]
2559388
2559312
-
Arg
ACG
[ENA]
¡û
>W1710865295
LMGO01000001
Betaproteobacteria
Achromobacter sp. Root565 [LMGO]
2558743
2558667
-
Arg
ACG
[ENA]
¡û
>W1710868045
LMIU01000001
Betaproteobacteria
Achromobacter sp. Root83 [LMIU]
66811
66887
+
Arg
ACG
[ENA]
¡û
>W1710868046
LMIU01000001
Betaproteobacteria
Achromobacter sp. Root83 [LMIU]
67019
67095
+
Arg
ACG
[ENA]
¡û
>W1710868047
LMIU01000001
Betaproteobacteria
Achromobacter sp. Root83 [LMIU]
67733
67809
+
Arg
ACG
[ENA]
¡û
>WENV180006377
FLRY01022251
[FLRY] metagenome; saliva
1
77
+
Arg
ACG
[ENA]
¢þ
>WENV180006553
FLRY01120564
[FLRY] metagenome; saliva
183
107
-
Arg
ACG
[ENA]
¢þ
>WENV183727176
PJTO01010140
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
431
507
+
Arg
ACG
[ENA]
¢þ
>WENV183728057
PJTP01025198
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
546
470
-
Arg
ACG
[ENA]
¢þ
>WENV183728058
PJTP01025198
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
350
274
-
Arg
ACG
[ENA]
¢þ
>WENV170706742
LNAP01006033
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
7767
7691
-
Arg
ACG
[ENA]
¢þ
>WENV170706743
LNAP01006033
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
7557
7481
-
Arg
ACG
[ENA]
¢þ
>WENV170706744
LNAP01006033
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3985
3909
-
Arg
ACG
[ENA]
¢þ
>WENV170708014
LNAP01044061
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
326
250
-
Arg
ACG
[ENA]
¢þ
>C181078166
CP023270
Betaproteobacteria
Achromobacter spanius MYb73 [CP023270]
4227815
4227739
-
Arg
ACG
-
¡û
>C181078167
CP023270
Betaproteobacteria
Achromobacter spanius MYb73 [CP023270]
4227223
4227147
-
Arg
ACG
-
¡û
>C181111293
CP025030
Betaproteobacteria
Achromobacter spanius DSM 23806 [CP025030]
5330321
5330245
-
Arg
ACG
-
¡û
>C181111294
CP025030
Betaproteobacteria
Achromobacter spanius DSM 23806 [CP025030]
5330081
5330005
-
Arg
ACG
-
¡û
>C181111295
CP025030
Betaproteobacteria
Achromobacter spanius DSM 23806 [CP025030]
5329793
5329717
-
Arg
ACG
-
¡û
>C191084122
CP032084
Betaproteobacteria
Achromobacter sp. B7 [CP032084]
4097829
4097753
-
Arg
ACG
-
¡û
>C191084123
CP032084
Betaproteobacteria
Achromobacter sp. B7 [CP032084]
4097570
4097494
-
Arg
ACG
-
¡û
>C191084124
CP032084
Betaproteobacteria
Achromobacter sp. B7 [CP032084]
4096901
4096825
-
Arg
ACG
-
¡û
>C191129227
CP034689
Betaproteobacteria
Achromobacter spanius UQ283 [CP034689]
4498467
4498391
-
Arg
ACG
-
¡û
>C191129228
CP034689
Betaproteobacteria
Achromobacter spanius UQ283 [CP034689]
4498230
4498154
-
Arg
ACG
-
¡û
>C191129229
CP034689
Betaproteobacteria
Achromobacter spanius UQ283 [CP034689]
4497990
4497914
-
Arg
ACG
-
¡û
>C191205166
LR134302
Betaproteobacteria
Achromobacter spanius NCTC13519 [LR134302]
4959069
4959145
+
Arg
ACG
-
¡û
>C191205167
LR134302
Betaproteobacteria
Achromobacter spanius NCTC13519 [LR134302]
4959309
4959385
+
Arg
ACG
-
¡û
>C191205168
LR134302
Betaproteobacteria
Achromobacter spanius NCTC13519 [LR134302]
4959597
4959673
+
Arg
ACG
-
¡û
>W1810270667
PREU01000007
Betaproteobacteria
Achromobacter spanius 6 [PREU]
34647
34723
+
Arg
ACG
[ENA]
¡û
>W1810270668
PREU01000007
Betaproteobacteria
Achromobacter spanius 6 [PREU]
34903
34979
+
Arg
ACG
[ENA]
¡û
>W1810270669
PREU01000007
Betaproteobacteria
Achromobacter spanius 6 [PREU]
35530
35606
+
Arg
ACG
[ENA]
¡û
>W10115880
ADMS01000102
Betaproteobacteria
Achromobacter piechaudii ATCC 43553 [ADMS]
35088
35012
-
Arg
ACG
[ENA]
¡û
>W10115881
ADMS01000102
Betaproteobacteria
Achromobacter piechaudii ATCC 43553 [ADMS]
34889
34813
-
Arg
ACG
[ENA]
¡û
>W10115882
ADMS01000102
Betaproteobacteria
Achromobacter piechaudii ATCC 43553 [ADMS]
34273
34197
-
Arg
ACG
[ENA]
¡û
>C11101530
CP002287
Betaproteobacteria
Achromobacter xylosoxidans A8 [CP002287]
4859481
4859405
-
Arg
ACG
[Ensembl]
¡û
>C11101531
CP002287
Betaproteobacteria
Achromobacter xylosoxidans A8 [CP002287]
4859278
4859202
-
Arg
ACG
[Ensembl]
¡û
>C11101532
CP002287
Betaproteobacteria
Achromobacter xylosoxidans A8 [CP002287]
4855695
4855619
-
Arg
ACG
[Ensembl]
¡û
>W11120377
ADMS01000102
Betaproteobacteria
Achromobacter piechaudii ATCC 43553 [ADMS]
35088
35012
-
Arg
ACG
[ENA]
¡û
>W11120378
ADMS01000102
Betaproteobacteria
Achromobacter piechaudii ATCC 43553 [ADMS]
34889
34813
-
Arg
ACG
[ENA]
¡û
>W11120379
ADMS01000102
Betaproteobacteria
Achromobacter piechaudii ATCC 43553 [ADMS]
34273
34197
-
Arg
ACG
[ENA]
¡û
>W1511591814
LBHW01000008
Betaproteobacteria
Achromobacter sp. LC458 [LBHW]
139189
139113
-
Arg
ACG
[ENA]
¡û
>W1511591815
LBHW01000008
Betaproteobacteria
Achromobacter sp. LC458 [LBHW]
138930
138854
-
Arg
ACG
[ENA]
¡û
>W1511591816
LBHW01000008
Betaproteobacteria
Achromobacter sp. LC458 [LBHW]
138303
138227
-
Arg
ACG
[ENA]
¡û
>W1511707501
LGVG01000029
Betaproteobacteria
Achromobacter spanius CGMCC9173 [LGVG]
26805
26881
+
Arg
ACG
[ENA]
¡û
>W1511707502
LGVG01000029
Betaproteobacteria
Achromobacter spanius CGMCC9173 [LGVG]
27042
27118
+
Arg
ACG
[ENA]
¡û
>W1511707503
LGVG01000029
Betaproteobacteria
Achromobacter spanius CGMCC9173 [LGVG]
27282
27358
+
Arg
ACG
[ENA]
¡û
>W1610070597
BCTK01000001
Betaproteobacteria
Achromobacter piechaudii NBRC 102461 [BCTK]
118782
118858
+
Arg
ACG
[ENA]
¡û
>W1610070598
BCTK01000001
Betaproteobacteria
Achromobacter piechaudii NBRC 102461 [BCTK]
118982
119058
+
Arg
ACG
[ENA]
¡û
>W1610070599
BCTK01000001
Betaproteobacteria
Achromobacter piechaudii NBRC 102461 [BCTK]
119598
119674
+
Arg
ACG
[ENA]
¡û
>W121019673
AGUF01000087
Betaproteobacteria
Achromobacter arsenitoxydans SY8 [AGUF]
183675
183599
-
Arg
ACG
[ENA]
¡û
>W121019674
AGUF01000087
Betaproteobacteria
Achromobacter arsenitoxydans SY8 [AGUF]
183470
183394
-
Arg
ACG
[ENA]
¡û
>W121019675
AGUF01000087
Betaproteobacteria
Achromobacter arsenitoxydans SY8 [AGUF]
182875
182799
-
Arg
ACG
[ENA]
¡û
>W1610727639
LMGO01000001
Betaproteobacteria
Achromobacter sp. Root565 [LMGO]
2559642
2559566
-
Arg
ACG
[ENA]
¡û
>W1610727640
LMGO01000001
Betaproteobacteria
Achromobacter sp. Root565 [LMGO]
2559388
2559312
-
Arg
ACG
[ENA]
¡û
>W1610727641
LMGO01000001
Betaproteobacteria
Achromobacter sp. Root565 [LMGO]
2558743
2558667
-
Arg
ACG
[ENA]
¡û
>W1610730391
LMIU01000001
Betaproteobacteria
Achromobacter sp. Root83 [LMIU]
66811
66887
+
Arg
ACG
[ENA]
¡û
>W1610730392
LMIU01000001
Betaproteobacteria
Achromobacter sp. Root83 [LMIU]
67019
67095
+
Arg
ACG
[ENA]
¡û
>W1610730393
LMIU01000001
Betaproteobacteria
Achromobacter sp. Root83 [LMIU]
67733
67809
+
Arg
ACG
[ENA]
¡û
>W1710067970
BCTK01000001
Betaproteobacteria
Achromobacter piechaudii NBRC 102461 [BCTK]
118782
118858
+
Arg
ACG
[ENA]
¡û
>W1710067971
BCTK01000001
Betaproteobacteria
Achromobacter piechaudii NBRC 102461 [BCTK]
118982
119058
+
Arg
ACG
[ENA]
¡û
>W1710067972
BCTK01000001
Betaproteobacteria
Achromobacter piechaudii NBRC 102461 [BCTK]
119598
119674
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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